Job Description P39393 Confidence 98.21% Date Thu Jan 5 12:00:28 GMT 2012 Rank 62 Aligned Residues 80 % Identity 9% Template c2z83A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8 Resolution 1.80 Å

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		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640						.	.	.	.	.	.	.	.	.												650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	Y	R	T	A	E	H	S	A	Q	Q	S	S	E	R	L	Q	S	Y	E	K	M	F	K	N	G	Q	L	N	V	L	N	C	S	T	T	M	E	.	.	.	.	.	M	G	V	D	T	D	R	V	M	.	.	.	.	.	.	.	.	.	.	.	T	L	A	S	R	S	Q	Q	A	T	I	P	G	P	E	W	H
Query Conservation																																								.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.																	.	.	.	.	.					.	.	.			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.																										.	.	.
Template Sequence		G	K	K	V	I	Q	L	N	R	K	S	Y	D	T	E	Y	P	K	.	.	.	.	C	K	N	G	D	W	D	F	V	I	T	T	D	I	S	A	N	F	G	A	S	R	V	I	D	.	.	.	C	R	K	S	V	K	P	T	I	L	E	E	G	E	G	R	V	I	L	G	N	P	S	P	I	T	S	A	S	A
Template Known Secondary structure		T							S	T	T						G	G	G	.	.	.	.	S	S	S				S					S	S						S		S					.	.	.												S	S	S							S
Template Predicted Secondary structure																				.	.	.	.																										.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.				.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	D	E	L	V	V	R	S	L	G	Y	K	T	V	E	L	N	E	F	I	L	P	A	K	A	T	N	A	V	E	R	V	K	D	I	Q	I	H	K	Q	L	N	G	P
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	G	R	V	G	R	N	P	N	Q	V	G	D	E	Y	H	Y	G	G	A
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S	S			T	T										S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		456	.																							.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions