Job Description P36566 Confidence 37.27% Date Thu Jan 5 11:53:21 GMT 2012 Rank 437 Aligned Residues 73 % Identity 12% Template c3trkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nonstructural polyprotein; PDBTitle: structure of the chikungunya virus nsp2 protease Resolution 2.40 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.												.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	V	S	D	N	M	Q	F	I	H	C	A	A	Q	D	V	A	S	H	L	E	T	P	V	D	L	I	L	F	.	.	.	.	.	.	.	.	.	.	.	H	A	V	L	E	W	V	A	D	P	R	S	V	L	Q	T	L	W	S	V	L	R	P	G	G	V	L	S	L	M	F	Y	N	A	H	G	L	L	M
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	L	G	V	R	G	A	D	Y	T	Y	N	L	E	L	G	L	P	A	T	L	G	R	Y	D	L	V	V	I	N	I	H	T	P	F	R	I	H	H	Y	Q	Q	C	V	D	H	A	X	K	L	Q	X	L	G	G	D	S	L	R	L	L	K	P	G	G	S	L	L	I	R	A	Y	G	Y	A	D	R	T	S
Template Known Secondary structure				T	T		S	S		S					G	G	G				G	G	G																S	S																			G	G	G	G																S
Template Predicted Secondary structure
Template SS confidence
		1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.
		158	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	M	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	V	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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