Job Description P36566 Confidence 98.43% Date Thu Jan 5 11:53:21 GMT 2012 Rank 272 Aligned Residues 136 % Identity 21% Template c3khkA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei. Resolution 2.55 Å

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		6	.	.	.	10	.	.	.	.	.	.	.							.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.																									.																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.																									.																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	D	D	I	A	E	K	F	S	R	N	I	.	.	.	.	.	.	Y	G	T	T	K	G	Q	L	R	Q	A	I	L	W	Q	D	L	D	R	V	L	A	E	M	.	G	P	Q	K	L	R	V	L	D	A	G	G	G	E	G	Q	T	A	I	K	M	A	E	R	G	H	.	.	.	.	.	.	.	.	.	.	.
Query Conservation														.	.	.	.	.	.																									.																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.											.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	E	Y	F	L	G	Q	F	A	L	A	E	G	K	Q	G	G	Q	Y	Y	T	P	.	.	.	.	.	.	.	.	.	.	K	S	I	V	T	L	I	V	E	M	L	E	P	Y	K	G	R	V	Y	D	P	A	M	G	S	G	G	F	F	V	S	S	D	K	F	I	E	K	H	A	N	V	K	H	Y	N	A	S
Template Known Secondary structure												T	T	T			S	T	T	T				.	.	.	.	.	.	.	.	.	.															S						S	S		T	T																			T	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.											230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
								68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	Q	V	I	L	C	D	L	S	A	Q	M	I	D	R	A	K	Q	A	A	E	A	K	G	V	S	D	N	M	Q	F	I	H	C	A	A	Q	D	V	A	S	H	L	E	T	P	V	D	L	I	L	F	H	A	V	L	E	W	V	A	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Q	K	K	Q	I	S	V	Y	G	Q	E	S	N	P	T	T	W	K	L	A	A	M	N	M	V	I	R	G	I	D	F	N	F	G	K	K	N	A	D	S	F	L	D	D	Q	H	P	D	L	R	A	D	F	V	M	T	N	P	P	F	N	M	K	D	W	W	H	E	K	L	A	D	D	P	R	W	T	I	N
Template Known Secondary structure				G	G	G																							T	T				B			S	S	S			T	T	T	S		S		T	T												S	S			S				G	G	G	T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
																129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	V	L	Q	T	L	W	S	V	L	R	P	G	G	V	L	S	L	M	F	Y	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	N	K	R	I	L	T	P	P	T	G	N	A	N	F	A	W	M	L	H	M	L	Y	H	L	A	P	T	G	S	M	A	L	L	L	A	N
Template Known Secondary structure											T	T		T											T													T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions