Job Description P36566 Confidence 48.80% Date Thu Jan 5 11:53:21 GMT 2012 Rank 415 Aligned Residues 98 % Identity 16% Template c2hwkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:helicase nsp2; PDBTitle: crystal structure of venezuelan equine encephalitis2 alphavirus nsp2 protease domain Resolution 2.45 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	L	R	V	L	D	A	G	G	G	E	G	Q	T	A	I	K	M	A	E	R	G	H	Q	V	I	L	C	D	L	S	A	Q	M	I	D	R	A	K	Q	A	A	E	A	K	G	V	S	D	N	M	Q	F	I	H	C	A	A	Q	D	V	A	S	H	L	E	T	P	V	D	L	I	L	F	H	A	V	L	E
Query Conservation
Alig confidence												.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	R	T	V	L	V	V	G	E	.	.	.	.	.	.	.	K	L	S	V	P	G	K	M	V	D	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	R	P	E	A	T	F	R	A	R	L	D	L	G	I	P	G	D	V	P	K	Y	D	I	I	F	V	N	V	R	T	P	Y	K	Y	H	H
Template Known Secondary structure		S		S							S	.	.	.	.	.	.	.					T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T	T		S					G	G	G		S		T	T	S																S
Template Predicted Secondary structure												.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		630	.	.	.	.	.	.	.	.	.								640	.	.	.	.	.	.	.	.	.	650	.														.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence		W	V	A	D	P	R	S	V	L	Q	.	.	.	.	.	.	T	L	W	S	V	L	R	P	G	G	V	L	S	L	M	F	Y	N	A	H	G	L	L	M	H	N	M	V
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.
Template Conservation
Template Sequence		Y	Q	Q	C	E	D	H	A	I	K	L	S	M	L	T	K	K	A	C	L	H	L	N	P	G	G	T	C	V	S	I	G	Y	G	Y	A	D	R	A	S	E	S	I	I
Template Known Secondary structure															T					G	G	G																S
Template Predicted Secondary structure
Template SS confidence
		690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions