 |
Job Description | P36566 | Confidence | 32.48% | Date | Thu Jan 5 11:53:21 GMT 2012 |
Rank | 451 | Aligned Residues | 97 |
% Identity | 15% | Template | c1z82A_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; |
PDBTitle: crystal structure of glycerol-3-phosphate dehydrogenase (tm0378) from2 thermotoga maritima at 2.00 a resolution
|
Resolution | 2.00 Å |
|
 |
  |   |
45 | . | . | . | . | 50 | . | . | . | . | . | |
|
. | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | L | R | V | L | D | A | G | G | G | E | . |
. |
G | Q | T | A | I | K | M | A | E | R | G | H | Q | V | I | L | C | D | L | S | A | Q | M | I | D | R | A | K | Q | A | A | E | A | K | G | V | S | D | N | M | Q | F | I | H | C | A | A | Q | D | V | A | S | H | L | E | T | P | V | D | L | I | L | F | H | A | V | L |
Query Conservation |   |
  |   |
|
|
|
|
|
|
|
|
| . | . |
|   |   |   |   |   |
|
|   |   |
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
Template Conservation |   |
  |   |
|
|   |
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
| . | . | . | . | . |
Template Sequence |   |
E | X | R | F | F | V | L | G | A | G | S | W | G | T | V | F | A | Q | X | L | H | E | N | G | E | E | V | I | L | W | A | R | R | K | E | I | V | D | L | I | N | V | S | H | T | S | P | Y | V | E | E | S | K | I | T | V | R | A | T | N | D | L | E | E | I | K | K | E | D | I | L | V | I | A | I | . |
. |
. |
. |
. |
Template Known Secondary structure |   |
|
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  | S |
| B | T | T | B | T | T |
|
|
|
| S |  |  |  | S |
| G | G | G |
|
| T | T |  |  |  |  |  |
| S | . | . | . | . | . |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
| . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | |
|
|
|
|
  |
  |   |
123 | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | W | V | A | D | P | R | S | V | L | Q | T | L | W | S | V | L | R | P | G | G | V | L | S | L | M | F | Y | N |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|
|
|
|
|   |
|   |
|   |   |   |   |
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |
|
Template Sequence |   |
. |
. |
. |
. |
. |
P | V | Q | Y | I | R | E | H | L | L | R | L | P | V | K | P | S | X | V | L | N | L | S | K |
Template Known Secondary structure |   |
. | . | . | . | . |
| G | G | G |  |  |  |  |  | T | T |
| S | S |
|
| S |  |  |  |  |
|
|
|
Template Predicted Secondary structure |   |
. | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|