Job Description P08189 Confidence 1.30% Date Thu Jan 5 11:00:45 GMT 2012 Rank 38 Aligned Residues 135 % Identity 8% Template c2vrsC_ PDB info PDB header:viral protein Chain: C: PDB Molecule:sigma-c capsid protein; PDBTitle: structure of avian reovirus sigma c 117-326, c2 crystal form Resolution 1.75 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		V	A	A	E	S	T	N	F	T	V	D	L	M	E	N	A	A	K	Q	.	.	.	F	N	N	I	G	A	T	T	P	V	V	P	F	R	I	L	L	S	P	C	G	N	A	V	S	A	V	K	V	G	F	T	G	V	A	D	S	H	N	A	N	L	L	A	L	E	N	T	V	S	A	A	S	G	L	G	I	Q
Query Conservation																					.	.	.
Alig confidence																					.	.	.
Template Conservation
Template Sequence		L	S	V	A	D	G	V	V	S	L	D	M	D	P	Y	F	C	S	Q	R	V	S	L	T	S	Y	S	A	E	A	Q	L	M	Q	F	R	W	M	A	R	G	T	N	G	S	S	D	T	I	D	M	T	V	N	A	H	C	H	G	R	R	T	D	Y	M	M	S	S	T	G	N	L	T	V	T	S	N	V	V	L
Template Known Secondary structure						T	T								T	T	T				S	S	S			S			S															S	S															T	T										S						S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		L	L	N	E	Q	Q	N	Q	I	P	L	N	A	P	S	S	A	L	S	W	T	T	L	T	P	G	K	P	N	T	L	N	F	Y	A	R	L	M	A	T	Q	V	P	.	.	.	V	T	A	G	H	I	N	A	T	A	T	F	T	L	E	Y	Q
Query Conservation																																													.	.	.
Alig confidence														.	.																														.	.	.
Template Conservation														.	.
Template Sequence		L	T	F	D	L	S	D	I	T	H	I	P	.	.	S	D	L	A	R	L	V	P	S	A	G	F	Q	A	A	S	F	P	V	D	V	S	F	T	R	D	S	A	T	H	A	Y	Q	A	Y	G	V	Y	S	S	S	R	V	F	T	I	T	F	P
Template Known Secondary structure						G	G	G	B	S	S			.	.	S		G	G	G	G	S							T	S											T	T														T	T
Template Predicted Secondary structure														.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions