Job Description P0A7Z4 Confidence 100.00% Date Thu Jan 5 11:06:30 GMT 2012 Rank 2 Aligned Residues 235 % Identity 100% Template c3iydB_ PDB info PDB header:transcription/dna Chain: B: PDB Molecule:dna-directed rna polymerase subunit alpha; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex Resolution 19.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	G	S	V	T	E	F	L	K	P	R	L	V	D	I	E	Q	V	S	S	T	H	A	K	V	T	L	E	P	L	E	R	G	F	G	H	T	L	G	N	A	L	R	R	I	L	L	S	S	M	P	G	C	A	V	T	E	V	E	I	D	G	V	L	H	E	Y	S	T	K	E	G	V	Q	E	D	I	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Q	G	S	V	T	E	F	L	K	P	R	L	V	D	I	E	Q	V	S	S	T	H	A	K	V	T	L	E	P	L	E	R	G	F	G	H	T	L	G	N	A	L	R	R	I	L	L	S	S	M	P	G	C	A	V	T	E	V	E	I	D	G	V	L	H	E	Y	S	T	K	E	G	V	Q	E	D	I	L	E
Template Known Secondary structure				S					S											S	S	S	S											T	T									T	T	T	T	T	T	S	S											B	T	T				S	S	S			T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	L	N	L	K	G	L	A	V	R	V	Q	G	K	D	E	V	I	L	T	L	N	K	S	G	I	G	P	V	T	A	A	D	I	T	H	D	G	D	V	E	I	V	K	P	Q	H	V	I	C	H	L	T	D	E	N	A	S	I	S	M	R	I	K	V	Q	R	G	R	G	Y	V	P	A	S	T	R	I	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	L	N	L	K	G	L	A	V	R	V	Q	G	K	D	E	V	I	L	T	L	N	K	S	G	I	G	P	V	T	A	A	D	I	T	H	D	G	D	V	E	I	V	K	P	Q	H	V	I	C	H	L	T	D	E	N	A	S	I	S	M	R	I	K	V	Q	R	G	R	G	Y	V	P	A	S	T	R	I	H
Template Known Secondary structure			T	G	G	G	S	S						S	S		S										S	S	S				S	T	T	S				S	S				S		T	T								S	S	S					B								S	S				T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	E	D	E	R	P	I	G	R	L	L	V	D	A	C	Y	S	P	V	E	R	I	A	Y	N	V	E	A	A	R	V	E	Q	R	T	D	L	D	K	L	V	I	E	M	E	T	N	G	T	I	D	P	E	E	A	I	R	R	A	A	T	I	L	A	E	Q	L	E	A	F	V	D	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	E	D	E	R	P	I	G	R	L	L	V	D	A	C	Y	S	P	V	E	R	I	A	Y	N	V	E	A	A	R	V	E	Q	R	T	D	L	D	K	L	V	I	E	M	E	T	N	G	T	I	D	P	E	E	A	I	R	R	A	A	T	I	L	A	E	Q	L	E	A	F	V	D	L	R
Template Known Secondary structure		S	S		S	S	S	T	T	T									S	S											B			S	S		S	S	B											S	S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions