Job Description P0A7Z4 Confidence 100.00% Date Thu Jan 5 11:06:30 GMT 2012 Rank 5 Aligned Residues 219 % Identity 18% Template c3howC_ PDB info PDB header:transcription,transferase/dna/rna hybrid Chain: C: PDB Molecule:dna-directed rna polymerase ii subunit rpb3; PDBTitle: complete rna polymerase ii elongation complex iii with a t-u2 mismatch and a frayed rna 3'-uridine Resolution 3.60 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.										.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.
Query Sequence		L	K	P	R	L	V	D	I	E	Q	V	S	S	T	H	A	K	V	T	L	E	P	L	E	R	G	F	G	H	T	L	G	N	A	L	R	R	I	L	L	S	S	M	P	G	C	A	V	T	E	V	E	I	.	.	.	.	.	.	.	.	.	D	G	V	L	H	E	Y	S	T	K	E	G	V	Q	E	D	I	L
Query Conservation																																																							.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		E	E	G	P	Q	V	K	I	R	E	A	S	K	D	N	V	D	F	I	L	.	.	.	.	S	N	V	D	L	A	M	A	N	S	L	R	R	V	M	I	A	E	I	P	T	L	A	I	D	S	V	E	V	E	T	N	T	T	V	L	A	D	E	F	I	A	H	R	L	G	L	I	P	L	Q	S	M	D	I	E
Template Known Secondary structure				S	S	B					S			S	S							.	.	.	.	B	S																S												S				S	S	S												S		B			S	S	G	G
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.	.	.												.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																											.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	L	L	N	L	K	G	L	A	V	R	V	Q	G	K	D	E	V	I	L	T	L	N	K	.	.	.	.	S	G	I	G	P	V	T	A	A	D	I	T	H	.	.	.	.	.	.	.	.	.	.	.	D	G	D	V	E	I	V	K	P	Q	H	V	I	C	H	L	T	D	E	N	A	S	I	S	M	R	I
Query Conservation																											.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.														.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																																																							.
Template Sequence		Q	L	E	Y	S	R	D	C	F	C	E	D	H	C	D	K	C	S	V	V	L	T	L	Q	A	F	G	E	S	E	S	T	T	N	V	Y	S	K	D	L	V	I	V	S	N	L	M	G	R	N	I	G	H	P	I	I	Q	D	K	E	G	N	G	V	L	I	C	K	L	.	R	K	G	Q	E	L	K	L	T	C
Template Known Secondary structure		G	S			G	G	G	S		S	S	S			T	T	T												S	S	S						G	G	G					S			S	S	S	S				B					S	S	S			S						.		S	S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.															.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	Q	R	G	R	G	Y	V	P	A	S	T	R	I	H	S	E	E	D	E	R	P	I	G	R	L	L	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	C	Y	S	P	V	E	R	I	A	Y	N	V	E	A	A	R	V	E	Q	R	T	D	L	D	K	L	V	I	E	M	E	T	N	G	T
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	K	K	G	I	A	K	E	H	A	K	W	G	P	A	A	A	I	E	F	E	Y	D	P	W	N	K	L	K	H	T	D	Y	W	Y	E	Q	D	S	A	K	E	W	P	Q	S	K	N	C	E	Y	E	D	P	P	N	E	G	D	P	F	D	Y	K	A	Q	A	D	T	F	Y	M	N	V	E	S	V	G	S
Template Known Secondary structure								T	T	T		S	T	T												T	T	T		S								S	S						S				G	G	G	T	T	S					S	S	S				T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	P	E	E	A	I	R	R	A	A	T	I	L	A	E	Q	L	E	A	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	V	D	Q	V	V	V	R	G	I	D	T	L	Q	K	K	V	A	S	I	L
Template Known Secondary structure		S		T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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