Job Description P0A7Z4 Confidence 100.00% Date Thu Jan 5 11:06:30 GMT 2012 Rank 7 Aligned Residues 217 % Identity 24% Template c3h0gO_ PDB info PDB header:transcription Chain: O: PDB Molecule:dna-directed rna polymerase ii subunit rpb3; PDBTitle: rna polymerase ii from schizosaccharomyces pombe Resolution 3.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.										.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.
Query Sequence		R	L	V	D	I	E	Q	V	S	S	T	H	A	K	V	T	L	E	P	L	E	R	G	F	G	H	T	L	G	N	A	L	R	R	I	L	L	S	S	M	P	G	C	A	V	T	E	V	E	I	.	.	.	.	.	.	.	.	.	D	G	V	L	H	E	Y	S	T	K	E	G	V	Q	E	D	I	L	E	I	L
Query Conservation																																																				.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.
Template Sequence		T	H	I	T	I	R	N	I	S	K	N	S	V	D	F	V	L	.	.	.	.	T	N	T	S	L	A	V	A	N	S	L	R	R	V	V	L	A	E	I	P	T	V	A	I	D	L	V	E	I	N	V	N	T	S	V	M	P	D	E	F	L	A	H	R	L	G	M	I	P	L	D	S	S	N	I	D	E	P	P
Template Known Secondary structure			S	B					B		S	S							.	.	.	.		S															S	S																S	S	S												S		B			T	T		S	S		S
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.					.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		83	.	.	.	.	.	.	90	.						.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.	.	.									.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.														.	.	.	.														.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.														.	.	.	.														.	.	.	.	.	.	.	.
Query Sequence		L	N	L	K	G	L	A	V	R	.	.	.	.	.	V	Q	G	K	D	E	V	I	L	T	L	N	K	.	.	.	.	S	G	I	G	P	V	T	A	A	D	I	T	H	.	.	.	.	.	.	.	.	D	G	D	V	E	I	V	K	P	Q	H	V	I	C	H	L	T	D	E	N	A	S	I	S	M	R	I	K
Query Conservation											.	.	.	.	.														.	.	.	.														.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.														.	.	.	.														.	.	.	.	.	.	.	.																	.
Template Conservation																																																																						.
Template Sequence		P	V	G	L	E	Y	T	R	N	C	D	C	D	Q	Y	C	P	K	C	S	V	E	L	F	L	N	A	K	C	T	G	E	G	T	M	E	I	Y	A	R	D	L	V	V	S	S	N	S	S	L	G	H	P	I	L	A	D	P	K	S	R	G	P	L	I	C	K	L	.	R	K	E	Q	E	I	S	L	R	C	I
Template Known Secondary structure		S	S					S	S	S		S	S	S	S	S		G	G	G	S												S	S						G	G	G		B			S			S	S			B				S	T	T	S			S						.		S	S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.											.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query Sequence		V	Q	R	G	R	G	Y	V	P	A	S	T	R	I	H	S	E	E	D	E	R	P	I	G	R	L	L	V	D	.	.	.	.	.	.	.	.	.	.	A	C	Y	S	P	V	E	R	I	A	Y	N	V	E	A	A	R	V	E	Q	R	T	D	L	.	.	.	.	D	K	L	V	I	E	M	E	T	N	G	T	I
Query Conservation																															.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence		A	K	K	G	I	A	K	E	H	A	K	W	S	P	T	S	A	V	A	F	E	Y	D	P	W	N	K	L	Q	H	T	D	Y	W	F	E	N	D	A	D	A	E	W	P	K	S	K	N	A	D	W	E	E	P	P	R	E	G	E	P	F	N	F	Q	E	E	P	R	R	F	Y	M	D	V	E	S	V	G	S	I
Template Known Secondary structure							G	G	G		T	T	S			B							S	S	S	S		S	S			S					S	S		S	T	T	T	S				G	G	G	T	T					S			S				S	S												B		S	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	E	E	A	I	R	R	A	A	T	I	L	A	E	Q	L	E	A	F	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	P	N	E	I	M	V	Q	G	L	R	I	L	Q	E	K	L	A	V	L	V	R
Template Known Secondary structure			T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions