Job Description P0A7Z4 Confidence 100.00% Date Thu Jan 5 11:06:30 GMT 2012 Rank 6 Aligned Residues 214 % Identity 20% Template c2pmzS_ PDB info PDB header:translation, transferase Chain: S: PDB Molecule:dna-directed rna polymerase subunit d; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus Resolution 3.40 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.										.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.
Query Sequence		L	V	D	I	E	Q	V	S	S	T	H	A	K	V	T	L	E	P	L	E	R	G	F	G	H	T	L	G	N	A	L	R	R	I	L	L	S	S	M	P	G	C	A	V	T	E	V	E	I	.	.	.	.	.	.	.	.	.	D	G	V	L	H	E	Y	S	T	K	E	G	V	Q	E	D	I	L	E	I	L	L
Query Conservation																																																			.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		S	I	N	L	L	H	K	D	D	T	R	I	D	L	V	F	.	.	.	.	E	G	Y	P	L	E	F	V	N	A	I	R	R	A	S	M	L	Y	V	P	I	M	A	V	D	D	V	Y	F	I	E	N	N	S	P	L	Y	D	E	I	L	A	H	R	L	A	L	I	P	F	M	S	E	E	A	L	D	T	Y	R
Template Known Secondary structure										S	S							.	.	.	.	B	S	S														T	T																S	S	S											T	S		B						T	T	T	S
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.					.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		84	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure							.	.																					.	.	.										.
Query SS confidence							.	.																					.	.	.										.
Query Sequence		N	L	K	G	L	.	.	A	V	R	V	Q	G	K	D	E	V	I	L	T	L	N	K	S	G	I	G	.	.	.	P	V	T	A	A	D	I	T	H	.	D	G	D	V	E	I	V	K	P	Q	H	V	I	C	H	L	T	D	E	N	A	S	I	S	M	R	I	K	V	Q	R	G	R	G	Y	V	P	A	S	T
Query Conservation							.	.																					.	.	.										.
Alig confidence							.	.																					.	.	.										.																	.
Template Conservation																																																										.
Template Sequence		W	P	E	E	C	I	E	C	T	E	N	C	E	K	C	Y	T	K	I	Y	I	E	A	E	A	P	N	E	P	R	M	I	Y	S	K	D	I	K	S	E	D	P	S	V	V	P	I	S	G	D	I	P	I	V	L	L	.	G	T	N	Q	K	I	S	L	E	A	R	L	R	L	G	Y	G	K	E	H	A	K	F
Template Known Secondary structure			T	T	T	T	T	T			S			T	T	T		B							B		S	S	S						G	G	G				S	S	T	T	S		B	S		T	T							.		S	S		B												T	T	T	T	S	T	T
Template Predicted Secondary structure																																																										.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.																			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.									.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Query Sequence		R	I	H	S	E	E	D	E	R	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	L	L	V	D	A	C	Y	S	P	V	E	R	I	A	Y	N	V	E	A	A	R	.	.	.	.	.	.	.	.	V	E	Q	R	T	D	L	D	K	L	V	I	E	M	E	T	N	G	T	I
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	P	V	S	L	S	V	V	R	Y	Y	P	K	V	E	I	L	A	N	C	E	K	A	V	N	V	C	P	E	G	V	F	E	L	K	D	G	K	L	S	V	K	N	E	L	S	C	T	L	C	E	E	C	L	R	Y	C	N	G	S	I	R	I	S	F	V	E	D	K	Y	I	L	E	I	E	S	V	G	S	L
Template Known Secondary structure				B	S													S	S			S	T						T	T	S					S	S	S					S		T	T	T			S			T	T					T	S		S															B		S	S	S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	E	E	A	I	R	R	A	A	T	I	L	A	E	Q	L	E	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	E	R	I	L	L	E	A	G	K	S	I	I	R	K	I	E	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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