Job Description P0A7Z4 Confidence 100.00% Date Thu Jan 5 11:06:30 GMT 2012 Rank 3 Aligned Residues 226 % Identity 46% Template c1smyB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna-directed rna polymerase alpha chain; PDBTitle: structural basis for transcription regulation by alarmone2 ppgpp Resolution 2.70 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	E	F	L	K	P	R	L	V	D	I	E	Q	V	S	S	T	H	A	K	V	T	L	E	P	L	E	R	G	F	G	H	T	L	G	N	A	L	R	R	I	L	L	S	S	M	P	G	C	A	V	T	E	V	E	I	D	G	V	L	H	E	Y	S	T	K	E	G	V	Q	E	D	I	L	E	I	L	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	S	K	L	K	A	P	V	F	T	V	R	T	Q	G	R	E	Y	G	E	F	V	L	E	P	L	E	R	G	F	G	V	T	L	G	N	P	L	R	R	I	L	L	S	S	I	P	G	T	A	V	T	S	V	Y	I	E	D	V	L	H	E	F	S	T	I	P	G	V	K	E	D	V	V	E	I	I	L	N
Template Known Secondary structure			S	T	T	T	T										T	T	T											T	T																T	S											S	S			S	T	T				T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		85	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		L	K	G	L	A	V	R	V	Q	G	K	.	.	D	E	V	I	L	T	L	N	K	S	G	I	G	P	V	T	A	A	D	I	T	H	D	G	D	V	E	I	V	K	P	Q	H	V	I	C	H	L	T	D	E	N	A	S	I	S	M	R	I	K	V	Q	R	G	R	G	Y	V	P	A	S	T	R	I	H	S	E
Query Conservation													.	.
Alig confidence													.	.																																							.
Template Conservation																																																					.
Template Sequence		L	K	E	L	V	V	R	F	L	N	P	S	L	Q	T	V	T	L	L	L	K	A	E	G	P	K	E	V	K	A	R	D	F	L	P	V	A	D	V	E	I	M	N	P	D	L	H	I	A	T	L	.	E	E	G	G	R	L	N	M	E	V	R	V	D	R	G	V	G	Y	V	P	A	E	K	H	G	I	K	D
Template Known Secondary structure										S	S	T	T		S										S	S	B			B	G	G	G	S				T	T				S		T	T		B				B	.		T	T														S											S
Template Predicted Secondary structure																																																					.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	E	R	P	I	G	R	L	L	V	D	A	C	Y	S	P	V	E	R	I	A	Y	N	V	E	A	A	R	V	E	Q	R	T	D	L	D	K	L	V	I	E	M	E	T	N	G	T	I	D	P	E	E	A	I	R	R	A	A	T	I	L	A	E	Q	L	E	A	F	V	D	L	R
Query Conservation
Alig confidence				.	.	.	.
Template Conservation				.	.	.	.
Template Sequence		R	I	.	.	.	.	N	A	I	P	V	D	A	V	F	S	P	V	R	R	V	A	F	Q	V	E	D	T	R	L	G	Q	R	T	D	L	D	K	L	T	L	R	I	W	T	D	G	S	V	T	P	L	E	A	L	N	Q	A	V	E	I	L	R	E	H	L	T	Y	F	S	N	P	Q
Template Known Secondary structure		S	T	.	.	.	.	T										S													B	T	T	B														S	S	S																			T	S		S
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
		161	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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