 |
Job Description | P0A7Z4 | Confidence | 76.34% | Date | Thu Jan 5 11:06:30 GMT 2012 |
Rank | 46 | Aligned Residues | 108 |
% Identity | 19% | Template | c1k1qA_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:dbh protein; |
PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus
|
Resolution | 2.80 Å |
|
 |
  |   |
199 | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | K | L | V | I | E | M | E | T | N | G | T | I | D | P | E | E | A | I | R | R | A | A | T | I | L | A | E | Q | L | E | A | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | D | L | R | D | V | R | Q | P | E | V | K | E | E | K | P | E | F | D | P | I | L | L | R | P | V | D | D | L |
Query Conservation |   |
|   |
|
|
|
|
|   |
|
|
|
|
|   |
|   |
|
|
|   |   |
|
|   |
|
|   |   |   |
|   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |
|   |   |   |
|   |
|
|
|   |   |   |   |
|
|
|
|
|
|   |   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |
|
Template Sequence |   |
D | E | A | Y | L | D | V | T | N | K | V | E | G | N | F | E | N | G | I | E | L | A | R | K | I | K | Q | E | I | L | E | K | E | K | I | T | V | T | V | G | V | A | P | N | K | I | L | A | K | I | I | A | D | K | S | K | P | N | G | L | G | V | I | R | P | T | E | V | Q | D | F | L | N | E | L | D | I | D | E | I |
Template Known Secondary structure |   |
T |  |  |  |  |  |
| T | T | T | T | T | T |
| T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| B |
|  |  |  |  | S | S |  |  |  |  |  |  |  |  |  | T | T | T | T | T |
|  |  |  |
|
| G | G | G |  |  |  |  |  |  | T |
| B | S | T | T |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
105 | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . |
  |
  |   |
261 | |
. | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
| . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | . |
L | T | V | R | S | A | N | C | L | K | A | E | A | I | H | Y | I | G | D | L | V | Q | R | T | E | V | E | L | L | K | T | P | N | L | G | K | K | S | L | T | E | I | K | D | V | L | A |
Query Conservation |   |
  | . |
|
|
|
|
|   |
|
|
|
|   |
|   |
|   |
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |
|
|
|   |
|   |
|
|
|   |
|
|   |   |
|
|   |
Alig confidence |   |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |   |   |   |   |   |
|   |   |   |
|
|   |
|
|   |
|
|   |   |   |   |   |   |   |
|   |   | . | . |   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |
Template Sequence |   |
P | G | I | G | S | V | L | A | R | R | L | N | E | L | G | I | Q | K | L | R | D | I | L | S | K | N | Y | N | E | L | E | K | . |
. |
I | T | G | K | A | K | A | L | Y | L | L | K | L | A | Q |
Template Known Secondary structure |   |
T | T | S |
|  |  |  |  |  |  |  | T | T | T | T |
|
| B | G | G | G | G | G | G | S |
|  |  |  |  |  | T | . | . | T | S |
| S |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  | . | . |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
185 | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | |
|
. | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|