Phyre 2 alignment of P37127 with d1o5wa1

Job Description P37127
Confidence 99.54% Date Thu Jan 5 11:54:48 GMT 2012

Rank 145 Aligned Residues 301

% Identity 14% Template d1o5wa1

SCOP info FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain

Resolution 3.20

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.								.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																																					.											.	.	.	.	.	.	.
Query SS confidence																																					.											.	.	.	.	.	.	.
Query Sequence	R	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	G	V	G	V	T	V	Y	D	R	H	P	E	I	G	G	.	L	L	T	F	G	I	P	S	F	K	.	.	.	.	.	.	.	L	D	K	S	L	L	A	R	R	R	E	I	F	S	A	M	G	I	H	F	E	L	N	C	E	V
Query Conservation																																					.											.	.	.	.	.	.	.
Alig confidence																																					.											.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	V	V	V	I	G	G	G	I	S	G	L	A	A	A	K	L	L	S	E	Y	K	I	N	V	L	V	L	E	A	R	D	R	V	G	G	R	T	Y	T	V	R	N	E	H	V	K	W	V	D	V	G	G	A	Y	V	G	P	T	Q	N	R	I	L	R	L	S	K	E	L	G	I	E	T	Y	K	V	N	V	N
Template Known Secondary structure								S													T	T								S	S	S	S	S		T	T	S						T	T	T	S				S	S				B		T	T											T	T									S
Template Predicted Secondary structure
Template SS confidence
	15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.

	401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence	G	K	D	V	S	L	D	S	L	L	E	Q	Y	D	A	V	F	V	G	V	G	T	Y	R	S	M	K	A	G	L	P	N	E	D	A	P	G	V	Y	D	A	L	P	F	L	I	A	N	T	K	Q	V	M	G	L	E	E	L	P	E	E	P	F	I	N	T	A	G	L	N	V	V	V	L	G	G	G	D	T	A
Query Conservation
Alig confidence					.	.	.	.
Template Conservation					.	.	.	.
Template Sequence	E	R	L	V	.	.	.	.	Q	Y	V	K	G	K	T	Y	P	F	R	G	A	F	P	P	V	W	N	P	L	A	Y	L	D	Y	N	N	L	W	R	T	M	D	E	M	G	K	E	I	P	V	D	A	P	W	Q	A	R	H	A	Q	E	W	D	K	M	T	M	K	D	L	I	D	K	I	C	W	T	K	T	A
Template Known Secondary structure	S				.	.	.	.				S	S							S	S	S					S																				T	S		T	T		G	G	G	S	T	T					T	T	S	B											S
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
	95	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

	481	.	.	.	.	.	.	.	.	490	.	.	.	.																									.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence	M	D	C	V	R	T	A	L	R	H	G	A	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	C	A	Y	R	R	D	E	A	N	M	P	G	S	K	K	E	V	K	N	A	R	E	E	.	G	A	N	F	E	F	N	V	Q	P	V	A	L	E	L	N
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence	R	E	F	A	Y	L	F	V	N	I	N	V	T	S	E	P	H	E	V	S	A	L	W	F	L	W	Y	V	R	Q	C	G	G	T	A	R	I	F	S	V	T	N	G	G	Q	E	R	K	F	V	G	G	S	G	Q	V	S	E	Q	I	M	G	L	L	G	D	K	V	K	L	S	S	P	V	T	Y	I	D	Q	T
Template Known Secondary structure													S	S		T	T	T	S	B												T								S	S	S	S	T	T	S				T	T		T	T									T	T	G	G	G			S	S									S
Template Predicted Secondary structure
Template SS confidence
	171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

	536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.									.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.
Query Sequence	E	Q	G	H	V	C	G	I	R	F	L	R	T	R	L	G	E	P	D	A	Q	G	R	R	R	P	V	P	V	E	G	S	E	F	V	M	P	A	D	A	V	I	M	A	F	G	.	.	.	.	.	.	.	.	F	N	P	H	G	M	P	W	L	E	S	H	G	V	T	V	D	K	W	G	R	I	I	A	D	V
Query Conservation																																															.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	D	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	V	E	T	L	N	H	E	H	Y	E	C	K	Y	V	I	S	A	I	P	P	I	L	T	A	K	I	H	F	K	P	E	L	P	P	E	R	N	Q	L	I	Q	R	L	F	P	P	G	I	M	T	Q	Y	G
Template Known Secondary structure	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	S												S		G	G	G	G	G	G	S			S	S										T	T					T	T	T					G
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	251	.	.																							.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

	608	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.			.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence	E	S	Q	Y	R	Y	Q	T	T	N	P	K	I	F	A	G	G	D	.	.	A	V	R	G	A	D	L	V	V	T	A	M	A	E	G	R	H	A	A	Q	G	I	I	D	W	L	G	V	K	S	V	K	S
Query Conservation																			.	.
Alig confidence		.	.	.															.	.
Template Conservation		.	.	.
Template Sequence	R	.	.	.	V	I	R	Q	P	V	G	R	I	Y	F	A	G	T	E	T	A	T	Q	W	S	G	Y	M	E	G	A	V	E	A	G	E	R	A	A	R	E	V	L	N	A	L	G	K	V	A	K	K	D
Template Known Secondary structure	G	.	.	.	G	T	T				S	S					S	G	G	G		S	S	S	T	T	S																		T	T	T	S	S		S	S	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
	421				.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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