Job Description P37127 Confidence 99.97% Date Thu Jan 5 11:54:48 GMT 2012 Rank 36 Aligned Residues 299 % Identity 21% Template c3d8xB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1 Resolution 2.80 Å

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		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.													.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	R	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	G	V	G	V	T	V	Y	D	R	H	P	E	I	G	G	L	L	.	.	.	.	.	.	.	.	.	.	.	.	T	F	G	I	P	S	F	K	L	D	K	S	L	L	A	R	R	R	E	I	F	S	A	M	G	I	H	F	E
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	V	T	I	I	G	S	G	P	A	A	H	T	A	A	I	Y	L	A	R	A	E	I	K	P	I	L	Y	E	G	M	M	A	N	G	I	A	A	G	G	Q	L	T	T	T	T	E	I	E	N	F	P	G	F	P	D	G	L	T	G	S	E	L	M	D	R	M	R	E	Q	S	T	K	F	G	T	E	I	I
Template Known Secondary structure										S													T	T									S	S	G	G	G			T	T		G	G	G	G		S					S	T	T		T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	C	E	V	G	K	D	V	S	L	D	S	L	L	E	Q	Y	D	A	V	F	V	G	V	G	T	Y	R	S	M	K	A	G	L	P	N	E	D	A	P	G	V	Y	D	A	L	P	F	L	I	A	N	T	K	Q	V	M	G	L	E	E	L	P	E	E	P	F	I	N	T	A	G	L	N	V	V	V	L	G
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		T	E	T	V	S	K	V	D	L	S	S	K	P	F	K	.	.	L	W	T	E	F	N	E	D	A	E	P	V	T	T	D	A	I	I	L	A	T	G	A	S	A	K	R	M	H	L	P	G	E	E	T	Y	W	Q	K	G	I	S	A	C	A	V	C	D	G	A	V	P	I	F	R	N	K	P	L	A	V	I	G
Template Known Secondary structure											S	S	S	S			.	.				T	T		T	T	S																						T	T					B	T	T	T			S						T	T	S	G	G	G	T	T	S
Template Predicted Secondary structure																	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	D	T	A	M	D	C	V	R	T	A	L	R	H	G	A	S	N	V	T	C	A	Y	R	R	D	E	A	N	M	P	G	S	K	K	E	V	K	N	A	R	E	E	G	A	N	F	E	F	N	V	Q	P	V	A	L	E	L	N	E	Q	G	H	V	C	G	I	R	F	L	R	T	R	L	G	E	P	D	A
Query Conservation
Alig confidence																			.											.																															.															.	.	.	.	.	.
Template Conservation																			.											.																															.															.	.	.	.	.	.
Template Sequence		G	G	D	S	A	C	E	E	A	Q	F	L	T	K	Y	G	S	.	K	V	F	M	L	V	R	K	D	H	.	L	R	A	S	T	I	M	Q	K	R	A	E	K	N	E	K	I	E	I	L	Y	N	T	V	A	L	E	A	K	G	.	D	G	K	L	L	N	A	L	R	I	K	N	T	K	.	.	.	.	.	.
Template Known Secondary structure		S	S											T	T	T	S	S	.							S	S	S	S	.			S												T	T						S									.	S	S	S	S									T	T	.	.	.	.	.	.
Template Predicted Secondary structure																			.											.																															.															.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		Q	G	R	R	R	P	V	P	V	E	G	S	E	F	V	M	P	A	D	A	V	I	M	A	F	G	F	N	P	H	G	M	P	W	L	E	S	H	G	V	T	V	D	K	W	G	R	I	I	A	D	V	E	S	Q	Y	R	Y	Q	T	T	N	P	K	I	F	A	G	G	D	A	V	R	G	A	.	D	L	V	V
Query Conservation																																																																													.
Alig confidence		.	.	.	.	.	.	.	.	.																										.	.																		.	.	.																				.
Template Conservation		.	.	.	.	.	.	.	.	.																										.	.																		.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	K	N	E	E	T	D	L	P	V	S	G	L	F	Y	A	I	G	H	T	P	A	T	K	I	V	.	.	A	G	Q	V	D	T	D	E	A	G	Y	I	K	T	V	P	G	.	.	.	S	S	L	T	S	V	P	G	F	F	A	A	G	D	V	Q	D	S	K	Y	R	Q	A	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T	T								S						S							G	G	G	.	.	T	T	T	S		B		T	T	S		B				T	T	.	.	.	S				S	S	T	T					G	G	G	G		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																										.	.																		.	.	.
Template SS confidence
											233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.				.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		635	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	M	A	E	G	R	H	A	A	Q	G	I	I	D	W	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	A	G	S	G	C	M	A	A	L	D	A	E	K	Y	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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