Job Description P37127 Confidence 99.50% Date Thu Jan 5 11:54:48 GMT 2012 Rank 148 Aligned Residues 303 % Identity 19% Template c2e5vA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:l-aspartate oxidase; PDBTitle: crystal structure of l-aspartate oxidase from2 hyperthermophilic archaeon sulfolobus tokodaii Resolution 2.09 Å

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		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.							.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																																				.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	G	V	G	V	T	V	Y	D	R	H	P	E	I	G	.	.	.	.	.	.	G	L	L	T	F	G	I	P	S	F	K	L	D	K	S	L	L	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	Y	I	I	G	S	G	I	A	G	L	S	A	G	V	A	L	R	R	A	G	K	K	V	T	L	I	S	K	R	I	D	G	G	S	T	P	I	A	K	G	G	V	A	A	S	V	G	S	D	D	S	P	E	L	H	A	Q	D	T	I	R	V	G	D	G	L	C	D	V	K	T	V	N	Y	V	T	S	E	A
Template Known Secondary structure								S													T	T								S	S	T	T		S	S	G	G	G			S							S	T	T															T	T		S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
				383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	R	E	I	F	S	A	M	G	I	H	F	E	L	N	C	E	V	G	K	D	V	S	L	D	S	L	L	E	Q	Y	D	A	V	F	V	G	V	G	T	Y	R	S	M	K	A	G	L	P	N	E	D	A	P	G	V	Y	D	A	L	P	F	L	I	A	N	T	K	Q	V	M	G	L	E	E	L	P	E
Query Conservation		.	.
Alig confidence		.	.																																																					.	.	.	.
Template Conservation																																																								.	.	.	.
Template Sequence		K	N	V	I	E	T	F	E	S	W	G	F	E	F	E	E	D	L	R	L	E	G	G	H	T	K	R	R	V	L	H	R	T	D	E	T	G	R	E	I	F	N	F	L	L	K	L	A	R	E	E	G	I	P	.	.	.	.	I	I	E	D	R	L	V	E	I	R	V	K	D	G	K	V	T	G	F	V	T	E
Template Known Secondary structure											T	T					S	S		B			T	T		S	S						S	S	S																	T	T			.	.	.	.													T	T								T
Template Predicted Secondary structure																																																								.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.													.	.	.	.	.	.	.	.	490	.	.	.	.	.	.					.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query Sequence		E	P	F	I	N	T	A	G	L	N	V	V	V	L	G	G	G	D	T	A	M	.	.	.	.	.	.	.	.	.	.	.	.	D	C	V	R	T	A	L	R	H	G	A	S	N	V	T	.	.	.	.	C	A	Y	R	R	D	E	A	N	M	P	G	S	K	K	E	V	K	N	A	R	E	E	G	A	N	F	E
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation
Template Sequence		K	R	G	L	V	E	D	V	D	K	L	V	L	A	T	G	G	Y	S	Y	L	Y	E	Y	S	S	T	Q	S	T	N	I	G	D	G	M	A	I	A	F	K	A	G	T	I	L	A	D	M	E	F	V	Q	F	H	P	T	V	T	S	L	D	G	E	V	F	L	L	T	E	T	L	R	G	E	G	A	Q	I	I
Template Known Secondary structure		T	T							S										G	G	G	S	S	S	B	S	S		T	T		S										T	T						T	T											G	G	G							T					T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.											.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		F	N	V	Q	P	V	A	L	E	L	N	E	Q	G	H	V	C	G	I	R	F	L	R	T	R	L	G	E	P	D	A	Q	G	R	R	R	P	.	.	.	.	.	.	.	.	.	.	V	P	V	E	G	S	E	F	V	M	P	A	D	A	V	I	M	A	F	G	F	N	P	H	G	M	P	W	L	E	S	H	G
Query Conservation																																							.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	N	E	N	G	.	.	.	.	.	.	.	.	E	R	F	L	F	N	Y	D	K	R	G	E	L	A	P	R	D	I	L	S	R	A	I	Y	I	E	M	L	K	G	H	K	V	F	I	D	L	S	K	I	E	D	F	E	R	K	F	P	V	V	A	K	Y	L	A	R	H	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.		T	T		.	.	.	.	.	.	.	.			G	G	G	G	T		T	T	G	G	G	S																T								T	T		T	T															T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.
Template SS confidence
												238	.	240	.									.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		595	.	.	.	.	600												.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.										.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Query Sequence		V	T	V	D	K	W	.	.	.	.	.	.	.	.	.	.	.	G	R	I	I	A	D	V	E	S	Q	Y	R	Y	Q	T	T	N	P	K	I	F	A	G	G	D	A	V	.	.	.	.	.	.	.	.	.	R	G	A	D	L	V	V	T	A	M	A	E	G	R	H	A	A	Q	G	I	I	D	W	L	G	V	K
Query Conservation								.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.
Template Sequence		H	N	Y	K	V	K	I	P	I	F	P	A	A	H	F	V	D	G	G	I	R	V	N	I	R	.	.	.	.	G	E	S	N	I	V	N	L	Y	A	I	G	E	V	S	D	S	G	L	H	G	A	N	R	L	A	S	N	S	L	L	E	G	L	V	F	G	I	N	L	P	R	Y	V	D	S	S	W	E	G	I
Template Known Secondary structure				T	T	S												S							T	T	.	.	.	.		B		S	S	B	T					G	G	G				S	S	S	T	T	S			T	T													G	G	G	T	T	T	S
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.					.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		655	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	T	D	D
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions