Job Description P37127 Confidence 99.97% Date Thu Jan 5 11:54:48 GMT 2012 Rank 40 Aligned Residues 290 % Identity 19% Template c2cduB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nadph oxidase; PDBTitle: the crystal structure of water-forming nad(p)h oxidase from2 lactobacillus sanfranciscensis Resolution 1.8 Å

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		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.						.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																							.	.																	.	.	.	.	.
Query SS confidence																							.	.																	.	.	.	.	.
Query Sequence		R	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	.	.	G	V	G	V	T	V	Y	D	R	H	P	E	I	G	G	L	.	.	.	.	.	L	T	F	G	I	P	S	F	K	L	D	K	S	L	L	A	R	R	R	E	I	F	S	A	M	G	I	H	F	E	L	N	C	E	V	G
Query Conservation																							.	.																	.	.	.	.	.
Alig confidence																							.	.																	.	.	.	.	.
Template Conservation
Template Sequence		K	V	I	V	V	G	C	T	H	A	G	T	F	A	V	K	Q	T	I	A	D	H	P	D	A	D	V	T	A	Y	E	M	N	D	N	I	S	F	L	S	G	I	A	L	Y	L	G	K	E	I	K	N	N	D	P	R	G	L	F	Y	S	S	P	E	E	L	S	N	L	G	A	N	V	Q	M	R	H	Q	V	T
Template Known Secondary structure									S															T	T								S	S	S			S	B									T	T		S	G	G	G		G	G	G	G	B	S									T	T						S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	V	S	L	D	S	L	L	E	Q	Y	D	A	V	F	V	G	V	G	T	Y	R	S	M	K	A	G	L	P	N	E	D	A	P	G	V	Y	D	A	L	P	F	L	I	A	N	T	K	Q	V	M	G	L	E	E	L	P	E	E	P	F	I	N	T	A	G	L	N	V	V	V	L	G	G	G	D	T	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	D	P	E	T	K	T	I	K	V	K	D	L	I	T	N	E	E	K	T	E	A	Y	D	K	L	I	M	T	T	G	S	K	P	T	V	P	P	I	P	G	I	D	S	S	R	V	Y	L	C	K	N	Y	N	D	A	K	K	L	F	E	E	A	P	K	A	K	T	I	T	I	I	G	S	G	Y	I	G	A
Template Known Secondary structure					G	G	G	T							T	T	T									S														S		T	T	T	T	S	T	T					S	S											G	G	G		S								S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.						.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		D	C	V	R	T	A	L	R	H	G	A	S	N	V	T	C	A	Y	R	R	D	E	A	N	M	P	G	S	K	K	E	V	.	.	.	.	.	K	N	A	R	E	E	G	A	N	F	E	F	N	V	Q	P	V	A	L	E	L	N	E	Q	G	H	V	C	G	I	R	F	L	R	T	R	L	G	E	P	D	A	Q
Query Conservation																																		.	.	.	.	.
Alig confidence													.																					.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	A	E	A	Y	S	N	Q	N	Y	.	N	V	N	L	I	D	G	H	E	R	V	L	Y	K	Y	F	D	K	E	F	T	D	I	L	A	K	D	Y	E	A	H	G	V	N	L	V	L	G	S	K	V	A	A	F	E	E	V	D	D	E	I	I	T	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T	T		.							S	S	S	S	T	T	T	T	T	S															T	T						S	S									T	T							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		G	R	R	R	P	V	P	V	E	G	S	E	F	V	M	P	A	D	A	V	I	M	A	F	G	F	N	P	H	G	M	P	W	L	E	S	H	G	V	T	V	D	K	W	G	R	I	I	A	D	V	E	S	Q	Y	R	Y	Q	T	T	N	P	K	I	F	A	G	G	D	A	V	R	G	A	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																							.	.																			.	.	.	.																				.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																							.	.																			.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	L	D	G	K	E	I	K	S	D	I	A	I	L	C	I	G	F	R	P	N	T	E	.	.	L	L	K	G	K	V	A	M	L	D	N	G	A	I	I	T	D	E	.	.	.	.	Y	M	H	S	S	N	R	D	I	F	A	A	G	D	S	A	A	V	H	Y	N	P	T	N	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T	T	S						S						S							G	.	.	G	G	T	T	T	S		B		T	T			B				T	.	.	.	.	T	S	B		S	S	T	T					G	G	G	B					G	G	G	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																							.	.																			.	.	.	.
Template SS confidence
											229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
						631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	D	L	V	V	T	A	M	A	E	G	R	H	A	A	Q	G	I
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		N	A	Y	I	P	L	A	T	N	A	V	R	Q	G	R	L	V	G	L	N	L
Template Known Secondary structure																					T	S
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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