Job Description P37127 Confidence 99.96% Date Thu Jan 5 11:54:48 GMT 2012 Rank 45 Aligned Residues 282 % Identity 23% Template c1zmcG_ PDB info PDB header:oxidoreductase Chain: G: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 complexed to nad+ Resolution 2.53 Å

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		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.																												.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query Sequence		R	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	G	V	G	V	T	V	Y	D	R	H	P	E	I	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	T	F	G	I	P	S	F	K	L	.	.	.	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	T	V	I	G	S	G	P	G	G	Y	V	A	A	I	K	A	A	Q	L	G	F	K	T	V	C	I	E	K	N	E	T	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	N	N	S	H	Y	Y	H	M	A	H	G	T	D	F	A	S	R	G	I	E	M	S	E	V	R	L	N	L	D	K
Template Known Secondary structure									S														T									S	S	S	S	S							S																			S					T	T	T				S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
										376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.									.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	D	K	S	L	L	A	R	R	R	E	I	F	S	A	M	G	I	H	F	E	L	N	C	E	V	G	K	D	.	.	.	.	.	.	.	.	V	S	L	D	S	L	L	E	Q	Y	D	A	V	F	V	G	V	G	T	Y	R	S	M	K	A	G	L	P	N	E	D	A	P	G	V	Y
Query Conservation		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.																				.
Template Conservation																																																																	.
Template Sequence		M	M	E	Q	K	S	T	A	V	K	A	L	T	G	G	I	A	H	L	F	K	Q	N	K	V	V	H	V	N	G	Y	G	K	I	T	G	K	N	Q	V	T	A	T	K	A	D	G	G	T	Q	V	I	D	T	K	N	I	L	I	A	T	G	S	.	E	V	T	P	F	P	G	I	T	I	D	E	D	T	I	V
Template Known Secondary structure																								T	T						S							T	T							T	T	S																	.						T	T					S	S	S
Template Predicted Secondary structure																																																																	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		D	A	L	P	F	L	I	A	N	T	K	Q	V	M	G	L	E	E	L	P	E	E	P	F	I	N	T	A	G	L	N	V	V	V	L	G	G	G	D	T	A	M	D	C	V	R	T	A	L	R	H	G	A	S	N	V	T	C	A	Y	R	R	D	E	A	N	M	P	G	S	K	K	E	V	K	N	A	R	E	.
Query Conservation																																																																																	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	S	T	G	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	K	K	V	P	E	K	M	V	V	I	G	A	G	V	I	G	V	E	L	G	S	V	W	Q	R	L	G	A	D	V	T	A	V	E	F	L	G	H	V	G	G	V	G	I	D	M	E	I	S	K	N	F	Q	R	I
Template Known Secondary structure							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S	S			S								S													T	T								S	S	S	S	S	S		T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.																		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
					519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.		590	.	.	.	.
Predicted Secondary structure		.	.	.																																																																								.
Query SS confidence		.	.	.																																																																								.
Query Sequence		.	.	.	E	G	A	N	F	E	F	N	V	Q	P	V	A	L	E	L	N	E	Q	G	H	V	C	G	I	R	F	L	R	T	R	L	G	E	P	D	A	Q	G	R	R	R	P	V	P	V	E	G	S	E	F	V	M	P	A	D	A	V	I	M	A	F	G	F	N	P	H	G	M	P	W	.	L	E	S	H	G
Query Conservation		.	.	.																																																																								.
Alig confidence		.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	K	Q	G	F	K	F	K	L	N	T	K	V	T	G	A	T	K	K	S	D	G	K	I	D	V	S	I	E	A	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	K	A	E	V	I	T	C	D	V	L	L	V	C	I	G	R	R	P	F	T	K	N	L	G	L	E	E	L	G
Template Known Secondary structure						T						S										T	T	S									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S									S													T	T	S	S					T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.																	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	V	D	K	W	G	R	I	I	A	D	V	E	S	Q	Y	R	Y	Q	T	T	N	P	K	I	F	A	G	G	D	A	V	R	G	A	D	L	V	V	T	A	M	A	E	G	R	H	A	A	Q	G	I	I
Query Conservation
Alig confidence															.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		I	E	L	D	P	R	G	R	I	P	V	N	T	.	.	.	.	R	F	Q	T	K	I	P	N	I	Y	A	I	G	D	V	V	A	G	P	M	L	A	H	K	A	E	D	E	G	I	I	C	V	E	G	M	A
Template Known Secondary structure						T	T	S						T	.	.	.	.	T		B		S	S	T	T					G	G	G	S	S	S																			T
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.					.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions