Phyre 2 alignment of P37127 with c1q1wA

Job Description P37127
Confidence 99.97% Date Thu Jan 5 11:54:48 GMT 2012

Rank 29 Aligned Residues 290

% Identity 23% Template c1q1wA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putidaredoxin reductase; PDBTitle: crystal structure of putidaredoxin reductase from2 pseudomonas putida

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.				.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.													.	.	.												.
Query SS confidence																												.	.													.	.	.												.
Query Sequence	V	D	K	R	V	A	I	I	G	A	G	P	A	G	L	A	C	A	D	V	L	T	R	N	G	V	G	.	.	V	T	V	Y	D	R	H	P	E	I	G	G	.	.	.	L	L	T	F	G	I	P	S	F	K	L	.	D	K	S	L	L	A	R	R	R	E	I	F	S	A	M	G	I	H	F	E	L	N	C	E
Query Conservation																												.	.													.	.	.												.
Alig confidence																												.	.													.	.	.												.
Template Conservation
Template Sequence	A	N	D	N	V	V	I	V	G	T	G	L	A	G	V	E	V	A	F	G	L	R	A	S	G	W	E	G	N	I	R	L	V	G	D	A	T	V	I	P	H	H	L	P	P	L	S	K	A	Y	L	A	G	K	A	T	A	E	S	L	Y	L	R	T	P	D	A	Y	A	A	Q	N	I	Q	L	L	G	G	T	Q
Template Known Secondary structure		S									S													T	T			S							S			S			B		S	G	G	G	G	T	T	T	T	T	T		S		S	G	G	G	B	S	S								T	T						S
Template Predicted Secondary structure
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.

	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.					.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence	V	G	K	D	V	S	L	D	S	L	L	E	Q	Y	D	A	V	F	V	G	V	G	T	Y	R	S	M	K	A	G	L	P	N	E	D	.	.	.	.	A	P	G	V	Y	D	A	L	P	F	L	I	A	N	T	K	Q	V	M	G	L	E	E	L	P	E	E	P	F	I	N	T	A	G	L	N	V	V	V	L	G
Query Conservation																																				.	.	.	.
Alig confidence				.	.	.	.	.	.																											.	.	.	.
Template Conservation				.	.	.	.	.	.
Template Sequence	V	T	A	.	.	.	.	.	.	I	N	R	D	R	Q	Q	V	I	L	S	D	G	R	A	L	D	Y	D	R	L	V	L	A	T	G	G	R	P	R	P	L	P	V	A	S	G	A	V	G	K	A	N	N	F	R	Y	L	R	T	L	E	D	A	E	C	I	R	R	Q	L	I	A	D	N	R	L	V	V	I	G
Template Known Secondary structure				.	.	.	.	.	.			T	T	T	T					T	T	S						S														G	G	G	T	T					S	T	T				S	S	S									T	T			T	T
Template Predicted Secondary structure				.	.	.	.	.	.
Template SS confidence
	83	.	.							.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

	476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.						.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure																																							.	.	.	.	.
Query SS confidence																																							.	.	.	.	.
Query Sequence	G	G	D	T	A	M	D	C	V	R	T	A	L	R	H	G	A	S	N	V	T	C	A	Y	R	R	D	E	A	N	M	P	G	S	K	K	E	V	.	.	.	.	.	K	N	A	R	E	E	G	A	N	F	E	F	N	V	Q	P	V	A	L	E	L	N	E	Q	G	H	V	C	G	I	R	F	L	R	T	R	L
Query Conservation																																							.	.	.	.	.
Alig confidence																		.																					.	.	.	.	.																															.	.	.	.	.	.	.
Template Conservation																		.																																																								.	.	.	.	.	.	.
Template Sequence	G	G	Y	I	G	L	E	V	A	A	T	A	I	K	A	N	M	.	H	V	T	L	L	D	T	A	A	R	V	L	E	R	V	T	A	P	P	V	S	A	F	Y	E	H	L	H	R	E	A	G	V	D	I	R	T	G	T	Q	V	C	G	F	E	M	S	T	D	Q	Q	K	V	T	A	.	.	.	.	.	.	.
Template Known Secondary structure		S													T	T		.							S	S	S	S	T	T	T	T	T	S																T						S										T	T	T						.	.	.	.	.	.	.
Template Predicted Secondary structure																		.																																																								.	.	.	.	.	.	.
Template SS confidence
	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

	551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Predicted Secondary structure
Query SS confidence
Query Sequence	G	E	P	D	A	Q	G	R	R	R	P	V	P	V	E	G	S	E	F	V	M	P	A	D	A	V	I	M	A	F	G	F	N	P	H	G	M	P	W	L	E	S	H	G	V	T	V	D	K	W	G	R	I	I	A	D	V	E	S	Q	Y	R	Y	Q	T	T	N	P	K	I	F	A	G	G	D	A	V	R	G	A
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.																										.											.	.								.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.																										.											.	.								.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	V	L	C	E	D	G	T	R	L	P	A	D	L	V	I	A	G	I	G	L	I	P	N	C	E	.	L	A	S	A	A	G	L	Q	V	D	.	.	N	G	I	V	I	N	E	.	.	.	.	H	M	Q	T	S	D	P	L	I	M	A	V	G	D	C	A	R	F	H
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S						S														.				T	T	T			B	S	.	.	S	S					T	.	.	.	.	T	S	B		S	S	T	T					G	G	G
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.																										.											.	.								.	.	.	.
Template SS confidence
													229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270					.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

											631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	D	L	V	V	T	A	M	A	E	G	R	H	A	A	Q	G	I	I
Query Conservation	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	Q	L	Y	D	R	W	V	R	I	E	S	V	P	N	A	L	E	Q	A	R	K	I	A	A	I	L	C
Template Known Secondary structure		T	T	T	T							S																T
Template Predicted Secondary structure
Template SS confidence
	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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