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Job DescriptionP37127
Confidence99.96%DateThu Jan 5 11:54:48 GMT 2012
Rank50Aligned Residues291
% Identity23%Templatec1ebdB_
PDB info PDB header:complex (oxidoreductase/transferase)Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   329330.........340.........350.........360.........370.........380.........390.........
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Query Sequence  RVAIIGAGPAGLACADVLTRNGVGVTVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMGIHFELNCE. . . . . . . . .
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Template Sequence  ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQE
Template Known Secondary structure  S

STT

SS
TTST
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   11........20.........30.........40.........50.........60.........70.........80.........90
 
   400.........410.........420.........430.........440.........450.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . VGKDVSLDSLLEQYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEE
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Template Sequence  WKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFK. . . . . FSNRILD
Template Known Secondary structure  TT
STTTT
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TT

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   91........100.........110.........120.........130.........140.........150........ .160.....
 
   458.460.........470.........480.........490.........500.........510... ......520.........530...
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Query Sequence  LPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEV. . . . KNAREEGANFEFNVQPVALE
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Template Sequence  STGALNLGEVPKSLVVIGGGYIGIELGTAYANFGT. KVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAE
Template Known Secondary structure  T
SS

S

ST
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   166...170.........180.........190.........200 .........210.........220.........230.........240....
 
   534.....540.........550.........560.........570.........580......... 590.........600.........610..
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Query Sequence  LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEGSEFVMPADAVIMAFGFNPHGMPW. LESHGVTVDKWGRIIADVESQYR
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Template Sequence  EREDGVTVTY. . . . . . . . . . . . . . . . . . . EANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQ. . . . Q
Template Known Secondary structure 
SSS...................TTS
S
S
TTSST

B
TTS
B


T....T
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   245....250.... .....260.........270.........280.........290.........300 .
 
   613......620.........630.........640........
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Query Sequence  YQTTNPKIFAGGDAVRGADLVVTAMAEGRHAAQGII
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Template Sequence  CRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIA
Template Known Secondary structure 
B
SSTT
GGGSSS


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   302.......310.........320.........330.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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