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Job DescriptionP06129
Confidence100.00%DateThu Jan 5 10:59:02 GMT 2012
Rank1Aligned Residues548
% Identity95%Templated2gufa1
SCOP infoTransmembrane beta-barrels Porins Ligand-gated protein channel
Resolution1.95

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80.........90.........100...
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Query Sequence  SPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGV
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Template Sequence  SPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQLSS. . . . . . IFIRGTNASHVLVLIDGV
Template Known Secondary structure 
TT
STTTSS
GGG

S
T
SSSTTSTT


......TTGGGTT
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   4.....10.........20.........30.........40.........50......... 60.........70.......
 
   104.....110.........120.........130.........140.........150.........160.........170.........180...
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Query Sequence  RLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQLGDK
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Template Conservation                 
    

 


 

  
  

  
 





 

                               
Template Sequence  RLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQLGDK
Template Known Secondary structure 



STTGGGGGGGS
GGG
SS


TT
SS





TTTSSTT
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   184.....190.........200.........210.........220.........230.........240.........250.........260...
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Query Sequence  TRVTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRTNYDAYYSPGSPLLDTR
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Template Conservation                                                  .............................   
Template Sequence  TRVTLLGDYAHTHDGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRTNY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . DTR
Template Known Secondary structure 


SSSS
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   164.....170.........180.........190.........200.........210. ...
 
   264.....270.........280.........290.........300.........310.........320.........330.........340...
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Query Sequence  KLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPHYGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTT
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Template Sequence  KLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPHYGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTT
Template Known Secondary structure 
SS
TTT
TTSTT

SS
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   244.....250.........260.........270.........280.........290.........300.........310.........320...
 
   344.....350.........360.........370.........380.........390.........400.........410.........420...
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Query Sequence  PGTGYVEDGYDQRNTGIYLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYG
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Template Sequence  PGTGYVEDGYDQRNTGIYLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYG
Template Known Secondary structure 
TT

GGGSTTTTTTT


S
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   324.....330.........340.........350.........360.........370.........380.........390.........400...
 
   424.....430.........440.........450.........460.........470.........480.........490.........500...
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Query Sequence  FYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDY
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Template Conservation                   
                                         
 
                

Template Sequence  FYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDY
Template Known Secondary structure  TT

TT


TTTTTTTT
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   404.....410.........420.........430.........440.........450.........460.........470.........480...
 
   504.....510.........520.........530.........540.........550.........560.........570.........580...
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Query Sequence  VDARNAITDTPLLRRAKQQVKYQLDWQLYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRG
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Template Conservation          
  
   
         
            
                     
   

   
       
  
Template Sequence  VDARNAITDTPLLRRAKQQVKYQLDWQLYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRG
Template Known Secondary structure  TTT

B
TT

STT


SSSS


SSSS
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   484.....490.........500.........510.........520.........530.........540.........550.........560...
 
   584.....590.........600.........610....
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Query Sequence  KIANLFDKDYETVYGYQTAGREYTLSGSYTF
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Template Sequence  KIANLFDKDY. . . . . . . . AGREYTLSGSYTF
Template Known Secondary structure  STT



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   564.....570... ......580......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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