Job Description P06129 Confidence 2.68% Date Thu Jan 5 10:59:02 GMT 2012 Rank 64 Aligned Residues 76 % Identity 17% Template c4a1aC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:rpl4; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. Resolution 3.52 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.												.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	K	K	A	S	L	L	T	A	C	S	V	T	A	F	S	A	W	A	Q	D	T	.	.	.	.	.	.	.	.	.	.	.	S	P	D	T	L	V	V	T	A	N	R	F	E	Q	P	R	S	T	V	L	A	P	T	T	V	V	T	R	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	V	N	Q	K	R	H	A	V	A	A	A	L	A	A	S	A	L	V	P	L	V	F	A	R	G	H	R	I	S	N	V	Q	E	L	P	Y	V	F	D	D	S	V	E	S	Y	E	K	T	K	Q	A	V	A	F	L	K	R	V	G	A	Y	D	D	V	L	R	V	A	E	T	K	A	L	R	A	G	Q	G
Template Known Secondary structure																			T								T	T				T	T			S	S	S					T	T	G	G	G			S												T	T																G	G	G
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
																	54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	R	W	Q	S	T	S	V	N	D	V	L	R	R	L	P	G	V	D	I	T	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	R	N	R	R	Y	K	L	R	R	G	P	L	V	V	Y	G	N	E	K	S	T	L	T	R	A	L	R	N	I	P	G	V	D	V	C	N
Template Known Secondary structure		G	G	G	T																T	T		S						T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions