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Job DescriptionP20099
Confidence100.00%DateThu Jan 5 11:37:46 GMT 2012
Rank20Aligned Residues625
% Identity18%Templated1kqfa2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20... ......30... ......40.........50.........60.........70......
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Query Sequence  RYSVLTAAHWGPMLVET. . . . . . DGETVFSSRG. . . . ALATGMENSLQSAVRDQVHSNTRVRFPMVRKGFLASPENPQGI
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Template Sequence  NTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRA. . . . . . . . . . . .
Template Known Secondary structure 
SSBTT

S
S
TTS


TT
TTTTT


TTT
TTB

S

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   48.50.........60.........70.........80.........90.........100.........110.....
 
   77..80.........90.........100....... ..110.........120.........130.........140....
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Query Sequence  RGQDEFVRVSWDEALDLIHQQHKRIREAYGP. . . . . . . . . . . . ASIFAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHL
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Template Sequence  PGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASN. . . . ETGMLTQKFARSLGMLAVDN
Template Known Secondary structure  TT
SS




TTS
B
S

TTS
....TTB


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   116...120.........130.........140.........150.........160.........170. ........180.........190.
 
   145....150.........160.........170.........180.........190.........200.........210.........220....
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Query Sequence  GDYSTGAAQAIMPYVVGGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPM
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Template Sequence  QARVHGPTVASLAPTFGR. . . . GAMTNHWVDIKNANVVMVMGGNAAEAHPVGF. . . . . . . RWAMEAKNNNDATLIVVDPR
Template Known Secondary structure  GGG

S
....
S
SS
TGGGGG
SS

STTTT.......S


SS
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   192.......200......... 210.........220.........230.........240 .........250.........260
 
   225....230.........240.........250.........260.........270....
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Query Sequence  RSETVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FTRTA. . . SVADIYAPIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSW
Template Known Secondary structure 

...T
S


TT
TT
S
BSTTBBB
TT

TTTTTTTT

TTS
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   262.... ...270.........280.........290.........300.........310.........320.........330........
 
   275....280.........290.........300.........310....... ..320.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . YAVFASYLLGESDGIAKTAEWAAEICGVGAAKIRELAAIFHQN. . . . . TTMLMAGWGM
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Template Sequence  NYQLDENGYAKRDETLTHPRCVWNLLKEHVS. . . . . . RYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTTFLYALGW
Template Known Secondary structure  SB
B
TTSSB
B
TTS
STTBT......T




GGGSTT

S
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   339340.........350.........360......... 370.........380.........390.........400.........410..
 
   328.330.........340.........350.........360.........370.........380.........390.........400.....
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Query Sequence  QRQQFGEQKHWMIVTLAAMLGQIGTPGGGFGLSYHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARIVEALENP. .
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Template Sequence  TQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLA
Template Known Secondary structure  SSTTT
TT
TT
S


BTTTT
STTGGG

BTT

SS


SSS
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   413......420.........430.........440.........450.........460.........470.........480.........490..
 
   406...410.........420.........430.........440....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GGAYQHNGMNRHFPDIRFIWWAGGANFTHHQDTNRLIRA
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Template Sequence  DQVNYWSNYPKFFVSLMKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSC
Template Known Secondary structure  S


GGGGGGG

GGGGGGGGGS

BSS


TT


S

SSS
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   493......500.........510.........520.........530.........540.........550.........560.........570..
 
   445....450.........460.... .....470.........480.........490.........500.......
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Query Sequence  WQKPELVVISECFWTAAAKH. . . . . . . . . . . . . . . . . ADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARND
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Template Sequence  LSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIAN. . . SGRWLQWHWKGQDAPGEARND
Template Known Secondary structure  TT
SSB

TTTTTTS

GGGG


GGG


B

GGGS

...TT



S

STT
B
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   573......580.........590.........600.........610.........620........ .630.........640.........
 
   508.510......... 520.........530......... 540.........550.........560...
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Query Sequence  FDVFAELSERWE. . . . . . . . . . . . . . . . KGGYARFTEGKSELQWLETF. . . . . . . . YNVARQRGASQQVELPPFAEFWQA
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Template Sequence  GEILAGIYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDD
Template Known Secondary structure 

SSS



SSTTS


SS

TTS

TT
B
S
GGG

SS
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   650.........660.........670.........680.........690.........700.........710.........720.........
 
   564. ....570.........580.........590.........600.........610.........620.........630...
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Query Sequence  NQ. . . . . . . . . . LIEMPENPDSERFIRFADFCRDPLAHPLKTASGKIEIFSQRIADYGYPDCPGHPMWLEPDEWQGNAEP
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Template Sequence  GTTASSCWIYTGSWTEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASAD. . . . . . . . . . . . . . . INGKPWDPK
Template Known Secondary structure  SS
S
GGGTTSTTGGG
B



TTSSS

TTBSTTTT
SSTTGGGGB
...............TTS
BSSTT
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   730.........740.........750.........760.........770.........780..... ....790....
 
   634.....640.........650.........660.........670........ .680.........
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Query Sequence  EQLQVLSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDAQER. . . . GIQDGDTVRLW
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Template Sequence  RMLIQWNGSK. . . . WTGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHY
Template Known Secondary structure  S


SSS....SS

SS
S

TTSS

S
TTSTTSSB
SS
TT
STT
SS



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   795....800.... .....810.........820.........830.........840.........850
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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