Job Description P20099 Confidence 51.17% Date Thu Jan 5 11:37:46 GMT 2012 Rank 123 Aligned Residues 51 % Identity 14% Template c2yujA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1 Resolution UNK

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		633	.	.			.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		P	E	Q	.	.	L	Q	V	L	S	A	H	P	A	H	R	L	H	S	Q	L	N	Y	S	S	L	R	E	L	Y	A	V	A	N	R	E	P	V	T	I	H	P	D	D	A	Q	E	R	G	I	Q	D	G	D	T	V	R	L	W	N
Query Conservation					.	.
Alig confidence					.	.																	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence		T	Y	P	M	L	F	K	L	T	N	K	N	S	D	R	M	T	H	C	G	V	.	.	.	.	.	.	.	L	E	F	V	A	D	E	G	I	C	Y	L	P	H	W	M	M	Q	N	L	L	L	E	E	G	G	L	V	Q	V	E	S
Template Known Secondary structure			S	S								T	T	T	T								.	.	.	.	.	.	.						B	T	T	B					S							T			T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.								80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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