Job Description P20099 Confidence 100.00% Date Thu Jan 5 11:37:46 GMT 2012 Rank 5 Aligned Residues 695 % Identity 20% Template c2vpyE_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:thiosulfate reductase; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) Resolution 2.50 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence		R	Y	S	V	L	T	A	A	H	W	G	P	M	L	V	E	T	D	G	E	T	V	F	S	S	R	G	.	.	.	.	A	L	A	T	G	M	E	N	S	L	Q	S	A	V	R	D	Q	V	H	S	N	T	R	V	R	F	P	M	V	R	K	G	F	L	A	S	P	E	N	P	Q	G	I	R	G	Q	D	E	F
Query Conservation																													.	.	.	.
Alig confidence													.																.	.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation													.																																																				.	.	.	.	.	.	.	.
Template Sequence		Q	I	C	E	G	C	F	W	R	C	G	.	I	V	A	H	A	V	G	N	R	V	Y	K	V	E	G	Y	E	A	N	P	K	S	R	G	R	L	C	P	R	G	Q	G	A	P	Q	T	T	Y	D	P	D	R	L	K	R	P	L	I	R	V	E	.	.	.	.	.	.	.	.	G	S	Q	R	G	E	G	K	Y
Template Known Secondary structure						S	S	T	T				.						S	S	S									T	T	S	T	T	T	T	T									G	G	G	G	G	G		T	T	S			S						T	.	.	.	.	.	.	.	.	T			S	S	S
Template Predicted Secondary structure													.																																																				.	.	.	.	.	.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.									.	.	.	.	.	.	110	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		V	R	V	S	W	D	E	A	L	D	L	I	H	Q	Q	H	K	R	I	R	E	A	Y	G	P	A	S	I	F	A	G	S	Y	G	W	R	S	N	G	V	L	H	K	A	S	T	L	L	Q	R	Y	M	A	L	A	G	G	Y	T	.	.	G	H	L	G	D	Y	S	T	G	A	A	Q	A	I	M	P	Y	V	V
Query Conservation																																																													.	.
Alig confidence																																				.	.	.	.	.	.	.																			.	.
Template Conservation																																				.	.	.	.	.	.	.
Template Sequence		R	V	A	T	W	E	E	A	L	D	H	I	A	K	K	M	L	E	I	R	E	K	Y	G	P	E	A	I	A	F	F	G	H	G	.	.	.	.	.	.	.	T	G	D	Y	W	F	V	D	F	L	P	A	A	W	G	S	P	N	A	A	K	P	S	V	S	L	C	T	A	P	R	E	V	A	S	Q	W	V	F
Template Known Secondary structure																										G	G	G	S						S	.	.	.	.	.	.	.	T	T					T	T	T					T	T											T	T	T											S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.								.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	S	E	V	Y	Q	Q	Q	T	S	W	P	L	V	L	E	H	S	D	V	V	V	L	W	S	A	N	P	L	N	T	L	K	I	A	W	N	A	S	D	E	Q	G	L	S	Y	F	S	A	L	R	D	S	G	K	K	L	I	C	I	D	P	M	R	S	E	T	V	D	F	F	G	D	K	M	E	W	V	A
Query Conservation
Alig confidence				.	.	.	.																															.	.	.	.	.	.	.																											.	.	.
Template Conservation				.	.	.	.																															.	.	.	.	.	.	.																											.	.	.
Template Sequence		G	R	.	.	.	.	P	I	G	G	H	E	P	I	D	W	E	N	A	R	Y	I	V	L	I	G	H	H	I	G	E	D	T	H	N	T	.	.	.	.	.	.	.	Q	L	Q	D	F	A	L	A	L	K	N	G	A	K	V	V	V	V	D	P	R	F	S	T	A	A	.	.	.	A	K	A	H	R	W	L	P
Template Known Secondary structure		S	S	.	.	.	.				S	S			B		G	G	G		S						S			B	T	T	B					.	.	.	.	.	.	.											T	T								S	B			T	T	G	.	.	.	G	G		S
Template Predicted Secondary structure				.	.	.	.																															.	.	.	.	.	.	.																											.	.	.
Template SS confidence
		186	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.								.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.				.	.	.	.	.	.	250	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		P	H	M	G	T	D	V	A	L	M	L	G	I	A	H	T	L	V	E	N	G	W	H	D	E	A	F	L	A	R	C	T	T	G	Y	A	V	F	A	S	Y	L	L	G	E	S	D	G	I	A	K	T	A	E	W	A	A	E	I	C	G	V	G	A	A	K	I	R	E	L	A	A	I	F	H	Q	N	T	.	.
Query Conservation																																																																																.	.
Alig confidence																																													.	.	.	.	.	.																														.	.
Template Conservation																																													.	.	.	.	.	.
Template Sequence		I	K	P	G	T	D	T	A	L	L	L	A	W	I	H	V	L	I	Y	E	D	L	Y	D	K	E	Y	V	A	K	Y	T	V	G	F	E	E	L	K	A	H	V	K	.	.	.	.	.	.	D	F	T	P	E	W	A	E	K	H	T	E	I	P	A	Q	V	I	R	E	V	A	R	E	M	A	A	H	K	P	R
Template Known Secondary structure				T	T																T	T		S												T	T	T					T	T	.	.	.	.	.	.	T												S															T	T	T	S
Template Predicted Secondary structure																																													.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.							.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.					.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.
Query SS confidence																																																														.	.	.	.
Query Sequence		T	M	L	M	A	G	W	G	M	Q	R	Q	Q	F	G	E	Q	K	H	W	M	I	V	T	L	A	A	M	L	G	Q	I	G	T	P	G	G	G	F	G	L	S	Y	H	F	A	N	G	G	N	P	T	R	R	S	A	V	L	S	S	.	.	.	.	M	Q	G	S	L	P	G	G	C	D	A	V	D	K	I	P
Query Conservation																																																														.	.	.	.
Alig confidence																																																														.	.	.	.
Template Conservation
Template Sequence		A	V	L	P	P	T	R	H	N	V	W	Y	G	D	D	T	Y	R	V	M	A	L	L	Y	V	N	V	L	L	G	N	Y	G	R	P	G	G	F	Y	I	A	Q	S	P	Y	L	E	K	Y	P	L	P	P	L	P	L	E	P	A	A	G	G	C	S	G	P	S	G	G	D	H	E	P	E	G	F	K	P	R	A
Template Known Secondary structure								S				S	T	T																T	T		B	T	S	T	T	S	B				B													S						S			S	S		S	T	T	T	T	S	S	S	S	S	S			T
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	R	I	V	E	A	L	E	N	P	G	G	A	Y	Q	H	N	G	M	N	R	H	F	P	D	I	R	F	I	W	W	A	G	G	A	N	F	T	H	H	Q	D	T	N	R	L	I	R	A	W	Q	K	P	E	L	V	V	I	S	E	C	F	W	T	A	A	A	K	H	A	D	I	V	L	P	A	T	T	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	G	K	F	F	A	R	S	T	A	I	Q	E	L	I	E	P	M	I	T	G	E	P	Y	P	I	K	G	L	F	A	Y	G	I	N	L	F	H	S	I	P	N	V	P	R	T	K	E	A	L	K	N	L	D	L	Y	V	A	I	D	V	L	P	Q	E	H	V	M	W	A	D	V	I	L	P	E	A	T	Y
Template Known Secondary structure		T	T	T	S	S	S	S	S	S			G	G	G	T	T	S							S	S									S							S	S													S							S	S							T	S	S					B			G
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	R	N	D	L	T	M	T	G	D	Y	S	N	Q	H	L	V	P	M	K	Q	V	V	P	P	R	Y	E	A	R	N	D	F	D	V	F	A	E	L	S	E	R	W	E	K	G	G	Y	A	R	F	T	E	G	K	S	E	L	Q	W	L	E	T	F	Y	N	V	A	R	Q	R	G	A	S	Q	Q	V	E	L
Query Conservation
Alig confidence																																																						.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.													.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	R	Y	D	D	F	V	L	V	A	H	K	T	P	F	I	Q	L	R	T	P	A	H	E	P	L	F	D	T	K	P	G	W	W	I	A	R	E	L	G	L	R	L	G	L	E	Q	Y	F	P	W	.	.	.	K	T	I	E	E	Y	L	E	T	R	L	Q	.	.	.	.	.	.	.	.	.	.	S	L	G
Template Known Secondary structure		G	G										B	S	S									S	S				S	S		B												T	T	T		T	T	T				.	.	.	S											T	.	.	.	.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure																																																						.	.	.													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.				.	.	540	.	.	.	.	.	.	.	.	.											550	.	.
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	F	A	E	F	W	Q	A	N	Q	L	I	E	M	P	E	N	P	D	S	E	R	F	I	R	F	A	D	F	C	R	D	P	L	A	H	P	L	K	T	A	S	G	K	I	E	I	F	S	Q	R	I	A	D	Y	G	Y	P	D	C	P	G	H	P	M	W	L	E	P	D	E	W	Q	G	N	A	E	P	E
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.																																.	.	.												.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.																																.	.	.												.	.	.	.
Template Sequence		L	D	L	E	T	M	K	G	M	G	T	L	V	Q	R	G	K	P	W	.	.	.	.	.	.	.	.	L	E	D	W	E	K	E	G	R	L	P	F	G	T	A	S	G	K	I	E	L	Y	C	Q	R	F	K	E	A	G	H	.	.	.	Q	P	L	P	V	F	T	P	P	E	E	.	.	.	.	P	P	E	G
Template Known Secondary structure											S									S	.	.	.	.	.	.	.	.						T	T	T				S	S	S	S	S			S	S							S	S	S	S		.	.	.		S										.	.	.	.			T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.																																.	.	.												.	.	.	.
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.									.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.				.	.	.	.	.	.	.	610	.	.	.					.	.	.	.
		635	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.			.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		Q	L	Q	V	L	S	A	H	P	A	H	R	L	H	S	Q	L	N	Y	S	S	L	R	E	L	Y	A	V	A	N	R	E	P	V	T	I	H	P	D	D	A	Q	E	R	G	I	Q	D	G	D	T	V	R	L	W	N	A	R	G	.	.	Q	I	L	A	G	A	V	I	S	E	G	I	K	P	G	V	I	C	I
Query Conservation																																																													.	.
Alig confidence																						.	.																																						.	.
Template Conservation																						.	.
Template Sequence		F	Y	R	L	L	Y	G	R	S	P	V	H	T	F	A	R	T	Q	N	N	.	.	W	V	L	M	E	M	D	P	E	N	E	V	W	I	H	K	E	E	A	K	R	L	G	L	K	E	G	D	Y	V	M	L	V	N	Q	D	G	V	K	E	G	P	V	R	V	K	P	T	A	R	I	R	K	D	C	V	Y	I
Template Known Secondary structure								B			T	T			G	G	G	G	T	T		.	.									S													T	T			T	T								T	T	S												S	S	B		T	T	B		B
Template Predicted Secondary structure																						.	.
Template SS confidence
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.			.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.
		713	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	G	A	W	P	D	L	D	L	T	A	D	G	I	C	K	N	G	A	V	N	V	L	T	K	D	L	P	S	S	R	L	G	N	G	C	A	G	N	T	A	L	A	W	L	E	K	Y	N	G	P	E	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	H	G	F	G	H	K	A	P	L	M	R	L	A	H	G	R	G	A	S	D	N	Y	L	Q	T	R	Y	K	L	D	P	I	S	G	G	A	G	L	R	V	N	F	V	R	L	E	K	A	E	R	P	R	L	P
Template Known Secondary structure		B	T	T						T	T	S	T	T	T	T	T		S														S	S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		696	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750