Job Description P20099 Confidence 100.00% Date Thu Jan 5 11:37:46 GMT 2012 Rank 12 Aligned Residues 687 % Identity 20% Template c2v45A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand Resolution 2.40 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		R	Y	S	V	L	T	A	A	H	W	G	P	M	L	V	E	T	D	G	E	T	V	F	S	S	R	G	.	.	.	A	L	A	T	G	M	E	N	S	L	Q	S	A	V	R	D	Q	V	H	S	N	T	R	V	R	F	P	M	V	R	K	G	F	L	A	S	P	E	N	P	Q	G	I	R	G	Q	D	E	F	V
Query Conservation																													.	.	.
Alig confidence													.																.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	C	R	Y	C	G	T	G	C	G	.	V	L	V	G	V	K	D	G	K	A	V	A	I	Q	G	N	P	N	N	H	N	A	G	L	L	C	L	K	G	S	L	L	I	P	V	L	N	S	K	E	R	V	T	Q	P	L	V	R	R	.	.	.	.	.	.	.	.	.	.	.	.	H	K	G	G	K	L	E
Template Known Secondary structure					S	S		T	T				.							T	T									T	T	S	T	T	T	T								T						T		S		S			S					S	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T
Template Predicted Secondary structure													.																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70													.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		R	V	S	W	D	E	A	L	D	L	I	H	Q	Q	H	K	R	I	R	E	A	Y	G	P	A	S	I	F	A	G	S	Y	G	W	R	S	N	G	V	L	H	K	A	S	T	L	L	Q	R	Y	M	A	L	A	G	G	Y	T	.	G	H	L	G	D	Y	S	T	G	A	A	Q	A	I	M	P	Y	V	V	G	G
Query Conservation																																																												.
Alig confidence																																															.	.	.											.
Template Conservation																																															.	.	.
Template Sequence		P	V	S	W	D	E	A	L	D	L	M	A	S	R	F	R	S	S	I	D	M	Y	G	P	N	S	V	A	W	Y	G	S	G	Q	C	L	T	E	E	S	Y	V	A	N	K	.	.	.	I	F	K	G	G	F	G	T	N	N	V	D	G	N	P	R	L	C	M	A	S	A	V	G	G	Y	V	T	S	F	G	K
Template Known Secondary structure																									G	G	G							T	T	S											.	.	.				T	T	T								G	G	G	G	T	T												S	S
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	V	Y	Q	Q	Q	T	S	W	P	L	V	L	E	H	S	D	V	V	V	L	W	S	A	N	P	L	N	T	L	K	I	A	W	N	A	S	D	E	Q	G	L	S	Y	F	S	A	L	R	D	S	G	K	K	L	I	C	I	D	P	M	R	S	E	T	V	D	F	F	G	D	K	M	E	W	V	A	P	H
Query Conservation
Alig confidence		.	.	.	.																																	.	.	.	.	.	.																										.	.	.
Template Conservation		.	.	.	.																																	.	.	.	.	.	.																										.	.	.
Template Sequence		.	.	.	.	D	E	P	M	G	T	Y	A	D	I	D	Q	A	T	C	F	F	I	I	G	S	N	T	S	E	A	H	P	V	L	F	R	.	.	.	.	.	.	R	I	A	R	R	K	Q	V	E	P	G	V	K	I	I	V	A	D	P	R	R	T	N	T	S	.	.	.	R	I	A	D	M	H	V	A	F	R
Template Known Secondary structure		.	.	.	.		S		S	S		G	G	G	G	G	T		S						S							S						.	.	.	.	.	.										T	T								S	B			G	G	G	.	.	.	G	G		S
Template Predicted Secondary structure		.	.	.	.																																	.	.	.	.	.	.																										.	.	.
Template SS confidence
						155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.				.	.	.	.	.	.	.	.	220	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.										.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.
Query Sequence		M	G	T	D	V	A	L	M	L	G	I	A	H	T	L	V	E	N	G	W	H	D	E	A	F	L	A	R	C	T	.	.	.	.	.	.	.	.	.	T	G	Y	A	V	F	A	S	Y	L	L	G	E	S	D	G	I	A	K	T	A	E	W	A	A	E	I	C	G	V	G	A	A	K	I	R	E	L	A	A	I
Query Conservation																																.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		P	G	T	D	L	A	F	M	H	S	M	A	W	V	I	I	N	E	E	L	D	N	P	R	F	W	Q	R	Y	V	N	F	M	D	A	E	G	K	P	S	D	F	E	G	Y	K	A	F	L	E	N	.	.	.	.	.	.	Y	R	P	E	K	V	A	E	I	C	R	V	P	V	E	Q	I	Y	G	A	A	R	A
Template Known Secondary structure		T	T																T	T		S														T	T	S		B											G	G	.	.	.	.	.	.	G										T	S
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.							.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		314	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		F	H	Q	N	.	T	T	M	L	M	A	G	W	G	M	Q	R	Q	Q	F	G	E	Q	K	H	W	M	I	V	T	L	A	A	M	L	G	Q	I	G	T	P	G	G	G	F	G	L	S	Y	H	F	A	N	G	G	N	P	T	R	R	S	A	V	L	S	S	M	Q	G	S	L	P	G	G	C	D	A	V	D	K
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		F	A	E	S	A	A	T	M	S	L	W	C	M	G	I	N	Q	R	V	Q	G	V	F	A	N	N	L	I	H	N	L	H	L	I	T	G	Q	I	C	R	P	G	A	T	S	F	S	L	T	G	Q	P	N	A	C	G	G	V	R	D	G	G	A	L	S	H	L	L	P	A	G	R	A	I	P	N	A	K	H	R
Template Known Secondary structure					S	S	S											S	S	T	T																T			S	B	T	T	B								S	T	T					T	T	T	T	T		S	T	T			T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		393	.	.	.	.	.	.	400						.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.	.	.		.	460	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.																																																		.										.
Query SS confidence										.	.	.	.	.																																																		.										.
Query Sequence		I	P	V	A	R	I	V	E	.	.	.	.	.	A	L	E	N	P	G	G	A	Y	Q	H	N	G	M	N	R	H	F	P	D	I	R	F	I	W	W	A	G	G	A	N	F	T	H	H	Q	D	T	N	R	L	I	R	A	W	Q	K	P	E	.	L	V	V	I	S	E	C	F	W	.	T	A	A	A	K	H	A
Query Conservation										.	.	.	.	.																																																		.										.
Alig confidence										.	.	.	.	.																																																		.										.
Template Conservation
Template Sequence		A	E	M	E	K	L	W	G	L	P	E	G	R	I	A	P	E	P	G	Y	H	T	V	A	L	F	E	A	L	G	R	G	D	V	K	C	M	I	I	C	E	T	N	P	A	H	T	L	P	N	L	N	K	V	H	K	A	M	S	H	P	E	S	F	I	V	C	I	E	A	F	P	D	A	V	T	L	E	Y	A
Template Known Secondary structure								T	T			T	T		S		S	S															T	S								S							S	S	S								T	T		T	T								S		T	T		G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	V	L	P	A	T	T	S	F	E	R	N	D	L	T	M	T	G	D	Y	S	N	Q	H	L	V	P	M	K	Q	V	V	P	P	R	Y	E	A	R	N	D	F	D	V	F	A	E	L	S	E	R	W	E	K	G	G	Y	A	R	F	T	E	G	K	S	E	L	Q	W	L	E	T	F	Y	N	V	A	R	Q
Query Conservation
Alig confidence																				.	.	.																																						.	.
Template Conservation																				.	.	.																																						.	.
Template Sequence		D	L	V	L	P	P	A	F	W	C	E	R	D	G	V	Y	G	C	.	.	.	G	E	R	R	Y	S	L	T	E	K	A	V	D	P	P	G	Q	C	R	P	T	V	N	T	L	V	E	F	A	R	R	A	G	V	D	P	Q	.	.	L	V	N	F	R	N	A	E	D	V	W	N	E	W	R	M	V	S	K	G
Template Known Secondary structure		S					B			G	G	G	S							.	.	.	T	T	S									S			S	T	T		B													T	T			T	T	.	.	T	T			S	S													T	T
Template Predicted Secondary structure																				.	.	.																																						.	.
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.				.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510			.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.				.	.	.	620	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		R	G	A	S	Q	Q	V	E	L	P	P	F	A	E	F	W	Q	A	N	Q	L	I	E	M	P	E	N	P	D	S	E	R	F	I	R	F	A	D	F	C	R	D	P	L	A	H	P	L	K	T	A	S	G	K	I	E	I	F	S	Q	R	I	A	D	Y	G	Y	P	D	C	P	.	.	.	G	H	P	M	W	L
Query Conservation																																																																									.	.	.
Alig confidence						.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation						.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	T	Y	D	.	.	F	W	G	M	T	R	E	R	L	R	K	E	S	G	L	I	W	P	C	P	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	D	H	P	G	T	S	L	R	Y	V	R	G	Q	D	P	C	V	P	A	D	H	P	D	R	F	F	F	Y	G	K	P	D	G	R	A	V	I	W	M
Template Known Secondary structure		S	T	T		.	.		T	T									S	S				S				S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T					S	S	T	T	B	T	T	T	S	T	T	S		T	T		S	S	S	B			T	T	S	T	T	S
Template Predicted Secondary structure						.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		531	.	.	.			.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.														.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
		623	.	.	.	.	.	.	630			.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		E	P	D	E	W	Q	G	N	.	.	A	E	P	E	Q	L	Q	V	L	S	A	H	P	A	H	R	L	H	S	Q	L	N	Y	S	S	L	R	E	L	Y	A	V	A	N	R	E	P	V	T	I	H	P	D	D	A	Q	E	R	G	I	Q	D	G	D	T	V	R	L	W	N	A	R	G	Q	I	L	A	G	A	V
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		R	P	A	K	G	A	A	E	E	P	D	A	E	Y	P	L	Y	L	T	S	M	R	V	I	D	H	W	H	T	A	T	M	T	G	K	V	P	E	L	Q	K	A	N	P	I	A	F	V	E	I	N	E	E	D	A	A	R	T	G	I	K	H	G	D	S	V	I	V	E	T	R	R	D	A	M	E	L	P	A	R
Template Known Secondary structure								S	S				S	S	S										S	S			T	T		T	T	G	G	G		G	G	G	G	S	S		S	S														T			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.
		701	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	E	G	I	K	P	G	V	I	C	I	H	E	G	A	W	P	D	L	D	L	T	A	D	G	I	C	K	N	G	A	V	N	V	L	T	K	D	L	P	S	S	R	L	G	N	G	C	A	G	N	T	A	L	A	W	L	E	K	Y
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		V	S	D	V	C	R	P	G	L	I	A	V	P	F	F	D	P	.	.	.	.	.	.	.	.	.	.	.	.	K	K	L	V	N	K	L	F	L	D	A	.	T	D	P	V	S	R	E	P	E	Y	K	I	C	A	A	R	V	R	K	A
Template Known Secondary structure				S	S	B		T	T									T	.	.	.	.	.	.	.	.	.	.	.	.	T	S		G	G	G	T	S				.	B		T	T	T			B		T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		676	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.													.	.	.	.	.	.	.	700	.	.	.		.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.