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Job DescriptionP20099
Confidence100.00%DateThu Jan 5 11:37:46 GMT 2012
Rank11Aligned Residues692
% Identity18%Templatec2nyaF_
PDB info PDB header:oxidoreductaseChain: F: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30... ......40.........50.........60.........70.........80..
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Query Sequence  RYSVLTAAHWGPMLVETDGETVFSSRG. . . . ALATGMENSLQSAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQDEF
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Template Sequence  APCRFCGTGCG. VLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMKNG. . . . . . . KYDKEGEF
Template Known Secondary structure 
SSSTT

.TT
TT
TTTTT


TGGGTTS
TT


S
SSS.......S
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   8.10........ .20.........30.........40.........50.........60.........70. ........
 
   83......90.........100.........110.........120.........130.........140. ........150.........160.
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Query Sequence  VRVSWDEALDLIHQQHKRIREAYGPASIFAGSYGWRSNGVLHKASTLLQRYMALAGGYT. GHLGDYSTGAAQAIMPYVVG
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Template Sequence  TPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASK. . . LFKAGFRSNNIDPNARHCMASAVVGFMRTFG
Template Known Secondary structure 

T
GGG
TTS
...TS



GGGGTTS
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   80.........90.........100.........110.........120..... ....130.........140.........150......
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  GSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSETVDFFGDKMEWVAP
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Template Sequence  M. . . . DEPMGCYDDIEQADAFVLWGANMAEMHPILWS. . . . . . RITNRRLSNQNVTVAVLSTYQHRSF. . . ELADNGIIF
Template Known Secondary structure  S....
S
S

GGGGGG
SS

S......T
TT
SSB
TTG...GG
S
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   157 ..160.........170.........180......... 190.........200.........210.... .....220...
 
   242.......250.........260.........270... ......280........
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Query Sequence  HMGTDVALMLGIAHTLVENGWHDEAFLARCTT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GYAVFASYLLGESDG
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Template Sequence  TPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVA. . . . .
Template Known Secondary structure 
TTTTT








S

TTST
SSTT




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   224.....230.........240.........250.........260.........270.........280.........290........
 
   289290.........300.........310....... ..320.........330.........340.........350.........360......
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Query Sequence  IAKTAEWAAEICGVGAAKIRELAAIFHQN. . TTMLMAGWGMQRQQFGEQKHWMIVTLAAMLGQIGTPGGGFGLSYHFANG
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Template Sequence  . EYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCGPFSLTGQPSA
Template Known Secondary structure  .TS




TT

SSSTTT

SBTTB


STTT
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   299300.........310.........320.........330.........340.........350.........360.........370.......
 
   367. .370.........380.........390......... 400.........410.........420.........430.........440.
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Query Sequence  GN. PTRRSAVLSSMQGSLPGGCDAVDKIPVARIV. . . . EALENPGGAYQHNGMNRHFPDIRFIWWAGGANFTHHQDTNRL
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Template Sequence  CGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEE
Template Known Secondary structure  TTTT
STTB
STT
BTT
T

TT
S

S



TT


S

SS
TTTT
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   378.380.........390.........400.........410.........420.........430.........440.........450.......
 
   442 .......450.........460.........470.........480.........490.........500.........510.........
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Query Sequence  I. . RAWQKPELVVISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWE
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Template Sequence  RMPGWRDPRNFIIVSDPYPTVSALAADLILPTAMWVEKEGAYGN. . . AERRTQFWRQQVQAPGEAKSDLWQLVQFSRRFK
Template Known Secondary structure  T
TT
SS

TSS
GGGS

...TTS
B
S

STT
TT
B
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   458.460.........470.........480.........490.........500. ........510.........520.........530....
 
   520.........530.... .....540.........550.........560
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Query Sequence  KGGYARFTEGKSELQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . WLETFYNVARQRGASQQVELPPFAEF
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Template Sequence  TEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDLAPFDDY
Template Known Secondary structure  GGGTS
TT
GGGTT
BTSSTTTT
SBGGGS
TT
B
TB
TTTTTTT




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   535....540.........550.........560.........570.........580.........590.........600.........610....
 
   561........570.........580.........590 .........600.........610.........620.........630......
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Query Sequence  WQANQLIEMPENPDSERFIRFADFCRDPLA. . . . HPLKTASGKIEIFSQRIADYGYPDCPGHPMWLEPDEWQGNAEPEQL
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Template Sequence  HKARGLRWPVVNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIF. . . . . . . . . . . . . . . ALPFEPA. AEAPDEEYDL
Template Known Secondary structure  TTSS
S

BTTB

SS
SBTTT
TTS
TT
SB

TTSTTS
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.SS


SSS
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   615....620.........630.........640.........650.........660. ....... .670........
 
   637..640.........650.........660.........670.........680.........690.........700....... ..710....
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Query Sequence  QVLSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDAQERGIQDGDTVRLWNARGQILAGAVISEGIKP. . GVICIHE
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Template Sequence  WLSTGRVLEHWHTGSMTRRVPELHRAFPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPF
Template Known Secondary structure 

TT

TT
TTGGGSTTS
S



TTT

TT

SS
SSSS
B

TTS
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   679680.........690.........700.........710.........720.........730.........740.........750........
 
   715....720.........730.........740.........750.........760
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Query Sequence  GAWPDLDLTADGICKNGAVNVLTKDLPSSRLGNGCAGNTALAWLEK
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Template Sequence  FDA. . . . . . . . . . . . AQLVNKLTLDA. TDPLSKETDFKKCAVKLEK
Template Known Secondary structure 

T............TS
GGGT



.B
TTT

B
TT

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   759760. ........770.. .......780.........790.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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