Job Description P20099 Confidence 100.00% Date Thu Jan 5 11:37:46 GMT 2012 Rank 2 Aligned Residues 761 % Identity 39% Template c1tmoA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:trimethylamine n-oxide reductase; PDBTitle: trimethylamine n-oxide reductase from shewanella massilia Resolution 2.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		N	S	S	S	R	Y	S	V	L	T	A	A	H	W	G	P	M	L	V	E	T	D	G	E	T	V	F	S	S	R	G	A	L	A	T	G	M	E	N	S	L	Q	S	A	V	R	D	Q	V	H	S	N	T	R	V	R	F	P	M	V	R	K	G	F	L	A	S	P	E	N	P	Q	G	.	I	R	G	Q	D	E
Query Conservation																																																																											.
Alig confidence													.				.																																																										.
Template Conservation													.				.
Template Sequence		N	E	D	E	W	L	T	T	G	S	H	.	F	G	A	.	F	K	M	K	R	K	N	G	V	I	A	E	V	K	P	F	D	L	D	K	Y	P	T	D	M	I	N	G	I	R	G	M	V	Y	N	P	S	R	V	R	Y	P	M	V	R	L	D	F	L	L	K	G	H	K	S	N	T	H	Q	R	G	D	F	R
Template Known Secondary structure												T	.	T			.							T	T									T	T		S	S			G	G	G	G	T						S		T	T	B			S											G	G	G	S		G	G	G	T	T	S
Template Predicted Secondary structure													.				.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.		.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	R	V	S	W	D	E	A	L	D	L	I	H	Q	Q	H	K	R	I	R	E	A	Y	G	P	A	S	I	F	A	G	S	Y	G	W	R	S	N	G	V	L	H	K	A	S	T	L	L	Q	R	Y	M	A	L	A	G	G	Y	T	G	H	L	G	D	Y	S	T	G	A	A	Q	A	I	M	P	Y	V	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	R	V	T	W	D	K	A	L	T	L	F	K	H	S	L	D	E	V	Q	T	Q	Y	G	P	S	G	L	H	A	G	Q	T	G	W	R	A	T	G	Q	L	H	S	S	T	S	H	M	Q	R	A	V	G	M	H	G	N	Y	V	K	K	I	G	D	Y	S	T	G	A	G	Q	T	I	L	P	Y	V	L	G
Template Known Secondary structure																									T		G	G	G											S		T	T	T												T	T				B						S	S	S	T	T									T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.
Predicted Secondary structure																																											.	.	.	.																																	.
Query SS confidence																																											.	.	.	.																																	.
Query Sequence		G	S	E	V	Y	Q	Q	Q	T	S	W	P	L	V	L	E	H	S	D	V	V	V	L	W	S	A	N	P	L	N	T	L	K	I	A	W	N	A	S	D	E	.	.	.	.	Q	G	L	S	Y	F	S	A	L	R	D	S	G	K	K	L	I	C	I	D	P	M	R	S	E	T	V	D	F	F	G	D	.	K	M
Query Conservation																																											.	.	.	.																																	.
Alig confidence																																											.	.	.	.																												.	.	.			.
Template Conservation																																																																										.	.	.
Template Sequence		S	T	E	V	Y	A	Q	G	T	S	W	P	L	I	L	E	H	S	D	T	I	V	L	W	S	N	D	P	Y	K	N	L	Q	V	G	W	N	A	E	T	H	E	S	F	A	Y	L	A	Q	L	K	E	K	V	K	Q	G	K	I	R	V	I	S	I	D	P	V	V	T	K	T	Q	.	.	.	A	Y	L	G	C
Template Known Secondary structure		S			T	T	S													S						S							T	S			S	S	B				T															T	S	S							S	S						.	.	.				T
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	W	V	A	P	H	M	G	T	D	V	A	L	M	L	G	I	A	H	T	L	V	E	N	G	W	H	D	E	A	F	L	A	R	C	T	T	G	Y	A	V	F	A	S	Y	L	L	G	E	S	D	G	I	A	K	T	A	E	W	A	A	E	I	C	G	V	G	A	A	K	I	R	E	L	A	A	I	F	H	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	L	Y	V	N	P	Q	T	D	V	T	L	M	L	A	I	A	H	E	M	I	S	K	K	L	Y	D	D	K	F	I	Q	G	Y	S	L	G	F	E	E	F	V	P	Y	V	M	G	T	K	D	G	V	A	K	T	P	E	W	A	A	P	I	C	G	V	E	A	H	V	I	R	D	L	A	K	T	L	V	K
Template Known Secondary structure								T	T																T	T		S																					T	T	T	T	S													T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		N	T	T	M	L	M	A	G	W	G	M	Q	R	Q	Q	F	G	E	Q	K	H	W	M	I	V	T	L	A	A	M	L	G	Q	I	G	T	P	G	G	G	F	G	L	S	Y	H	F	A	N	G	G	N	P	T	R	R	S	A	V	L	S	S	M	Q	G	S	L	P	G	G	C	D	A	V	D	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																																																													.	.	.	.	.
Template Conservation
Template Sequence		G	R	T	Q	F	M	M	G	W	C	I	Q	R	Q	Q	H	G	E	Q	P	Y	W	M	A	A	V	L	A	T	M	I	G	Q	I	G	L	P	G	G	G	I	S	Y	G	H	H	Y	S	S	I	G	V	P	S	S	G	A	A	A	P	G	A	F	P	R	N	L	D	E	N	Q	K	P	L	F	D	S	S	D	F
Template Known Secondary structure		S								S	G	G	G	S	S	T	T	T															T		T	T	S	T	T					S		T	T	S	T	T	T	T	S													S	S			T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
							392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	K	I	P	V	A	R	I	V	E	A	L	E	N	P	G	G	A	Y	Q	H	N	G	M	N	R	H	F	P	D	I	R	F	I	W	W	A	G	G	A	N	F	T	H	H	Q	D	T	N	R	L	I	R	A	W	Q	K	P	E	L	V	V	I	S	E	C	F	W	T	A	A	A	K	H	A	D
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		K	G	A	S	S	T	I	P	V	A	R	W	I	D	A	I	L	E	P	G	K	T	I	D	A	N	G	S	K	V	V	Y	P	D	I	K	M	M	I	F	S	G	N	N	P	W	N	H	H	Q	D	R	N	R	M	K	Q	A	F	H	K	L	E	C	V	V	T	V	D	V	N	W	T	A	T	C	R	F	S	D
Template Known Secondary structure		T	T	S		S				G	G	G							S	T	T						S	S	S														S							S	S										T	T		S							S	B							T		S
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	L	P	A	T	T	S	F	E	R	N	D	L	T	M	T	G	D	Y	S	N	Q	H	L	V	P	M	K	Q	V	V	P	P	R	Y	E	A	R	N	D	F	D	V	F	A	E	L	S	E	R	W	E	K	G	G	Y	A	R	F	T	E	G	K	S	E	L	Q	W	L	E	T	F	Y	N	V	A	R	Q	R
Query Conservation
Alig confidence																																																											.	.
Template Conservation																																																											.	.
Template Sequence		I	V	L	P	A	C	T	T	Y	E	R	N	D	I	D	V	Y	G	A	Y	A	N	R	G	I	L	A	M	Q	K	M	V	E	P	L	F	D	S	L	S	D	F	E	I	F	T	R	F	A	A	V	L	G	K	E	K	E	.	.	Y	T	R	N	M	G	E	M	E	W	L	E	T	L	Y	N	E	C	K	A	A
Template Known Secondary structure						B			G	G	G	S								T	T	T											S				T	T		B													T	T					.	.			T	T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.			.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	S	Q	Q	V	E	L	P	P	F	A	E	F	W	Q	A	N	Q	L	I	E	M	P	E	N	P	D	S	E	R	F	I	R	F	A	D	F	C	R	D	P	L	A	H	P	L	K	T	A	S	G	K	I	E	I	F	S	Q	R	I	A	D	Y	G	Y	P	D	C	P	G	H	P	M	W	L	E	P	D	E
Query Conservation
Alig confidence					.																								.	.	.	.
Template Conservation					.																								.	.	.	.
Template Sequence		N	A	G	.	K	F	E	M	P	D	F	A	T	F	W	K	Q	G	Y	V	H	F	G	D	G	E	V	.	.	.	.	W	T	R	H	A	D	F	R	N	D	P	E	I	N	P	L	G	T	P	S	G	L	I	E	I	F	S	R	K	I	D	Q	F	G	Y	D	D	C	K	G	H	P	T	W	M	E	K	T	E
Template Known Secondary structure			T	T	.	T																							.	.	.	.			T	T							T	T	T	S			S	S	S	S	S	S			S	S						T	T			T	T	S		S	S							S	S
Template Predicted Secondary structure					.																								.	.	.	.
Template SS confidence
		558	.	560		.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.					.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
		627	.	.	630	.				.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.		.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
Predicted Secondary structure							.	.	.																					.
Query SS confidence							.	.	.																					.
Query Sequence		W	Q	G	N	A	.	.	.	E	P	E	Q	L	Q	V	L	S	A	H	P	A	H	R	L	H	S	Q	L	.	N	Y	S	S	L	R	E	L	Y	A	V	A	N	R	E	P	V	T	I	H	P	D	D	A	Q	E	R	G	I	Q	D	G	D	T	V	R	L	W	N	A	R	G	Q	I	L	A	G	A	V	I	S
Query Conservation							.	.	.																					.
Alig confidence							.	.	.																					.
Template Conservation
Template Sequence		R	S	H	G	G	P	G	S	D	K	H	P	I	W	L	Q	S	C	H	P	D	K	R	L	H	S	Q	M	C	E	S	R	E	Y	R	E	T	Y	A	V	N	G	R	E	P	V	Y	I	S	P	V	D	A	K	A	R	G	I	K	D	G	D	I	V	R	V	F	N	D	R	G	Q	L	L	A	G	A	V	V	S
Template Known Secondary structure			S	S	S	S	T	T	T	T	T											S	S	S	B	T	T	B	T	T	T						T	T	T		B	T	T	B													T	T			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		633	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
		703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.										720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.
Query Sequence		E	G	I	K	P	G	V	I	C	I	H	E	G	A	W	P	D	.	.	.	.	.	.	.	.	.	L	D	L	T	A	D	G	I	C	K	N	G	A	V	N	V	L	T	K	D	L	P	S	S	R	L	G	N	G	C	A	G	N	T	A	L	A	W	L	E	K	Y	N	G	P	E	L	T	L	T	A	F	E	P
Query Conservation																			.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	N	F	P	K	G	I	V	R	I	H	E	G	A	W	Y	G	P	V	G	K	D	G	S	T	E	G	G	A	E	V	G	A	L	C	S	Y	G	D	P	N	T	L	T	L	D	I	G	T	S	K	L	A	Q	A	C	S	A	Y	T	C	L	V	E	F	E	K	Y	Q	G	K	V	P	K	V	S	S	F	D	G
Template Known Secondary structure		T	T	S		T	T						T	T								T	T	S		S	G	G	G	G	S	T	T				S	S			G	G	G	S					B	S		T	T	T			B		T	T											S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		713	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.
		774	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		793	.