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Job DescriptionP20099
Confidence100.00%DateThu Jan 5 11:37:46 GMT 2012
Rank9Aligned Residues707
% Identity21%Templatec1h0hA_
PDB info PDB header:dehydrogenaseChain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.... .....30... ......40.........50.........60.........70.........80
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Query Sequence  RYSVLTAAHWGPMLVETD. . GETVFSSRG. . . . ALATGMENSLQSAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQD
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Template Sequence  SVCCYCSVGCG. LIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRA. . . . . . . . . . . . PGSD
Template Known Secondary structure 
SSBTT

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TTT


TT
TTTTT


TS
TTS
SS

............TT
S
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   15....20..... ....30.........40.........50.........60.........70....... ..80.
 
   81........90.........100......... 110.........120.........130.........140........
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Query Sequence  EFVRVSWDEALDLIHQQHKRIREAYGPAS. . . . . . . . . . . . IFAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHLGDYS
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Template Sequence  QWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDN. . . . EECWIYQAWLRSLGLFYIEHQARI
Template Known Secondary structure  S



TTS

S

TTS
....TTB


GGG
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   82.......90.........100.........110.........120.........130... ......140.........150.......
 
   149150.........160.........170.........180.........190.........200.........210.........220........
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Query Sequence  TGAAQAIMPYVVGGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSET
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Template Sequence  HSATVAALAESYG. . . . RGAMTNHWIDLKNSDVILMMGSNPAENHPIS. . . . . . . . FKWVMRAKDKGATLIHVDPRYTRT
Template Known Secondary structure 
S....

S
SS
TGGGGG
SS

STT........TT

SS

TT
Template Predicted Secondary structure 


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   159160.........170. ........180.........190.........200.. .......210.........220......
 
   229230.........240.........250.........260.........270....
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Query Sequence  VDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  S. . . TKCDLYAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFER
Template Known Secondary structure  G...GG
S


TT
TT
S
BGGGBBB
TT

TTTTTTTT
GGGG
B
B
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   227 ..230.........240.........250.........260.........270.........280.........290.........300...
 
   275....280.........290.........300.........310...... ...320.........330.
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Query Sequence  . . . . . . . . . . . . . . . . . . YAVFASYLLGESDGIAKTAEWAAEICGVGAAKIRELAAIFHQ. . . . . NTTMLMAGWGMQRQQ
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Template Sequence  DENGNPKRDETLKHPRCVFQIMKKHYE. . . . . . RYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHT
Template Known Secondary structure 
TTS
B
B
TTS
STTBT......T




GGGSTT





SS
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   304.....310.........320.........330 .........340.........350.........360.........370.......
 
   332.......340.........350.........360.........370.........380.........390...
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Query Sequence  FGEQKHWMIVTLAAMLGQIGTPGGGFGLSYHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKI. . . . . . . . . . . . . . . . . .
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Template Sequence  VGVQNIRAMSINQLLLGNIGVAGGGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSAN
Template Known Secondary structure  TT
SSSTT
S

SBTTTT
BTTTTT

BTT

S





TT


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   378.380.........390.........400.........410.........420.........430.........440.........450.......
 
   394.....400.........410.........420.........430.........440.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . PVARIVEALENPGGAYQHNGMNRHFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPE
Query Conservation  ........................
                          

 
     

    
      


 


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Template Sequence  WWSNFPKYSASYIKSMWPDADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTREALTKLD
Template Known Secondary structure  GGGG
TTS
S

B
TT


STT


S

SBSTT
S
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   458.460.........470.........480.........490.........500.........510.........520.........530.......
 
   450.........460..... ....470.........480.........490.........500.........510......
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Query Sequence  LVVISECFWTAAAKHA. . . . . . . . . . . . . DIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSE
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Template Sequence  WMVNVNIFDNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKEGSISN. . . SGRWMQWRYVGPEPRKNAIPDGDLIVELAK
Template Known Secondary structure  SS

TTTTGGGSTT

GGG


B

GGG


...TT


SS


TT
B
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   538.540.........550.........560.........570.........580.... .....590.........600.........610....
 
   517..520.........530..... ....540.... .....550.........560.........570
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Query Sequence  RWEKGGYARFTEGKSELQW. . . . . . . . . . . . . . LETFYNVAR. . . . . . . . . . QRGASQQVELPPFAEFWQANQLIEMP. .
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Template Sequence  RVQKLLAKTPGKLAAPVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIATFGHLQADGSTTSGCWI
Template Known Secondary structure  S
TT

S
GGGGB
TTS
B

BBSS
TT
TT
B
S
GGG

TTS
B

SSGG
Template Predicted Secondary structure 



















































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   615....620.........630.........640.........650.........660.........670.........680.........690....
 
   571........580.........590..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ENPDSERFIRFADFCRDPLAHP. . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  .................................                      .........................
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Template Conservation                                      
                                           
Template Sequence  YTGSYTEKGNMAARRDKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVDLNGKPYAPEKAVVEWNAAEKKWVGDVPDGP
Template Known Secondary structure  GTTSTTGGG
B




T

TTBSTTTT
SSTTGGGGB
TTS
BS
GGG
STTTTS

SS
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   695....700.........710.........720.........730.........740.........750.........760.........770....
 
   593......600.........610.........620.........630. ...
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Query Sequence  . . . . . . . . . . . . . . LKTASGKIEIFSQRIADYGYPDCPGHPMWLEPDEWQGNA. . . . . . . . . . . . . . . . . . . . . . . . EPE
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Template Sequence  WPPQADKEKGKRAFIMKPEGYAYLYGPGRED. . . . . . GPLPEYYEPMECPVIEHPFSKTLHNPTALHFATEEKAVCDPRY
Template Known Secondary structure  S

TT
TTT


S
TTSSSS
B
SS
TTSTT......
SS






SSS



SS
S

S
TT

SS

SS




TTS
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   775....780.........790.........800..... ....810.........820.........830.........840........
 
   635....640.........650.........660.........670.........680.........690.........700.........710....
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Query Sequence  QLQVLSAHPAHRLHSQLNYSSLRELYAVANREPVTIHPDDAQERGIQDGDTVRLWNARGQILAGAVISEGIKPGVICIHE
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Template Sequence  PFICSTYRVTEHWQTGLMTRNTPWLLEAEPQMFCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRIKPFAIQGQQ
Template Known Secondary structure 


TT

TTSTSS
S

T

TT
TT
TT


TT
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   849850.........860.........870.........880.........890.........900.........910.........920........
 
   715....720. ........730.........740.........750.........760.
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Query Sequence  GAWPDLD. . . LTADGICKNGAVNVLTKDLPSSRLGNGCAGNTALAWLEKY
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Template Sequence  VHMVGIPWHYGWSFPKNGGDAANILTPSV. GNPNTGIPETKAFMVNVTKA
Template Known Secondary structure 
S


TTSSTTS


GGGS

BS.SS
SSBSB

S

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   929930.........940.........950....... ..960.........970.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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