Job Description P20099 Confidence 100.00% Date Thu Jan 5 11:37:46 GMT 2012 Rank 3 Aligned Residues 758 % Identity 48% Template c1eu1A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dimethyl sulfoxide reductase; PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments. Resolution 1.30 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.																																	.
Query SS confidence																															.	.	.	.																																	.
Query Sequence		S	S	R	Y	S	V	L	T	A	A	H	W	G	P	M	L	V	E	T	D	G	E	T	V	F	S	S	R	G	.	.	.	.	A	L	A	T	G	M	E	N	S	L	Q	S	A	V	R	D	Q	V	H	S	N	T	R	V	R	F	P	M	V	R	K	G	.	F	L	A	S	P	E	N	P	Q	G	I	R	G	Q
Query Conservation																															.	.	.	.																																	.
Alig confidence								.																							.	.	.	.												.	.	.	.																		.
Template Conservation								.																																						.	.	.	.
Template Sequence		A	N	G	E	V	M	.	S	G	C	H	W	G	V	F	K	A	R	V	E	N	G	R	A	V	A	F	E	P	W	D	K	D	P	A	P	S	H	Q	L	P	G	V	L	.	.	.	.	D	S	I	Y	S	P	T	R	I	K	Y	P	M	V	R	R	E	F	L	E	K	G	V	N	A	D	R	S	T	R	G	N
Template Known Secondary structure								.				T	T									T	T									T	T		S	S			T	T						.	.	.	.		T	T	T	S	T	T	B			S											G	G	G	S		G	G	G	T	T	S
Template Predicted Secondary structure								.																																						.	.	.	.
Template SS confidence
		4	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	F	V	R	V	S	W	D	E	A	L	D	L	I	H	Q	Q	H	K	R	I	R	E	A	Y	G	P	A	S	I	F	A	G	S	Y	G	W	R	S	N	G	V	L	H	K	A	S	T	L	L	Q	R	Y	M	A	L	A	G	G	Y	T	G	H	L	G	D	Y	S	T	G	A	A	Q	A	I	M	P	Y	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	F	V	R	V	T	W	D	E	A	L	D	L	V	A	R	E	L	K	R	V	Q	E	S	Y	G	P	T	G	T	F	G	G	S	Y	G	W	K	S	P	G	R	L	H	N	C	Q	V	L	M	R	R	A	L	N	L	A	G	G	F	V	N	S	S	G	D	Y	S	T	A	A	A	Q	I	I	M	P	H	V
Template Known Secondary structure		S																											G	G	G													S	S															T			B				S		S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	G	S	E	V	Y	Q	Q	Q	T	S	W	P	L	V	L	E	H	S	D	V	V	V	L	W	S	A	N	P	L	N	T	L	K	I	A	W	N	A	S	D	E	Q	G	L	S	Y	F	S	A	L	R	D	S	G	K	K	L	I	C	I	D	P	M	R	S	E	T	V	D	F	F	G	D	K	M	E	W	V
Query Conservation
Alig confidence																																																												.													.	.
Template Conservation																																																												.													.	.
Template Sequence		M	G	T	L	E	V	Y	E	Q	Q	T	A	W	P	V	V	V	E	N	T	D	L	M	V	F	W	A	A	D	P	M	K	T	N	E	I	G	W	V	I	P	D	H	G	A	Y	A	G	M	K	A	L	K	E	K	G	T	R	.	V	I	I	N	P	V	R	T	E	T	A	D	.	.	Y	F	G	A	D	V	V
Template Known Secondary structure		T	S	S			T	T	S			S										S						S							T	T			S	S	B																T			.					S	B							.	.			T
Template Predicted Secondary structure																																																												.													.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	H	M	G	T	D	V	A	L	M	L	G	I	A	H	T	L	V	E	N	G	W	H	D	E	A	F	L	A	R	C	T	T	G	Y	A	V	F	A	S	Y	L	L	G	E	S	D	G	I	A	K	T	A	E	W	A	A	E	I	C	G	V	G	A	A	K	I	R	E	L	A	A	I	F	H	Q	N	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	R	P	Q	T	D	V	A	L	M	L	G	M	A	H	T	L	Y	S	E	D	L	H	D	K	D	F	L	E	N	C	T	T	G	F	D	L	F	A	A	Y	L	T	G	E	S	D	G	T	P	K	T	A	E	W	A	A	E	I	C	G	L	P	A	E	Q	I	R	E	L	A	R	S	F	V	A	G	R	T
Template Known Secondary structure					T	T																T	T		S																				T	T	T	T	T	S														S														S	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	M	A	G	W	G	M	Q	R	Q	Q	F	G	E	Q	K	H	W	M	I	V	T	L	A	A	M	L	G	Q	I	G	T	P	G	G	G	F	G	L	S	Y	H	F	A	N	G	G	N	P	T	R	R	S	A	V	L	S	S	M	Q	G	S	L	P	G	G	C	D	A	V	D	K	I	P	V	A	R	I	V
Query Conservation
Alig confidence																																																															.	.	.
Template Conservation																																																															.	.	.
Template Sequence		M	L	A	A	G	W	S	I	Q	R	M	H	H	G	E	Q	A	H	W	M	L	V	T	L	A	S	M	I	G	Q	I	G	L	P	G	G	G	F	G	L	S	Y	H	Y	S	N	G	G	S	P	T	S	D	G	P	A	L	G	G	I	S	.	.	.	D	G	G	E	G	G	A	T	S	I	P	C	A	R	V	V
Template Known Secondary structure							S	G	G	G	S	S	T	T	T															T		T	T	S	T	T					S		T	T	S	T	T	T	T	S				S									.	.	.								S				G	G	G
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.				.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	E	N	P	G	G	A	Y	Q	H	N	G	M	N	R	H	F	P	D	I	R	F	I	W	W	A	G	G	A	N	F	T	H	H	Q	D	T	N	R	L	I	R	A	W	Q	K	P	E	L	V	V	I	S	E	C	F	W	T	A	A	A	K	H	A	D	I	V	L	P	A	T	T	S	F	E	R	N	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	M	L	L	N	P	G	G	E	F	Q	F	N	G	A	T	A	T	Y	P	D	V	K	L	A	Y	W	A	G	G	N	P	F	A	H	H	Q	D	R	N	R	M	L	K	A	W	E	K	L	E	T	F	I	V	Q	D	F	Q	W	T	A	T	A	R	H	A	D	I	V	L	P	A	T	T	S	Y	E	R	N	D
Template Known Secondary structure							T	T						T	T															S							S	S									G	G	G		S							S	B							T		S					B			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	M	T	G	D	Y	S	N	Q	H	L	V	P	M	K	Q	V	V	P	P	R	Y	E	A	R	N	D	F	D	V	F	A	E	L	S	E	R	W	E	K	G	G	Y	A	R	F	T	E	G	K	S	E	L	Q	W	L	E	T	F	Y	N	V	A	R	Q	R	G	A	S	Q	Q	V	E	L	P	P	F	A	E
Query Conservation
Alig confidence																																														.	.
Template Conservation																																														.	.
Template Sequence		I	E	S	V	G	D	Y	S	N	R	A	I	L	A	M	K	K	V	V	D	P	L	Y	E	A	R	S	D	Y	D	I	F	A	A	L	A	E	R	L	G	K	G	A	E	.	.	F	T	E	G	R	D	E	M	G	W	I	S	S	F	Y	E	A	A	V	K	Q	A	E	F	K	N	V	A	M	P	S	F	E	D
Template Known Secondary structure							T	T	T											S				T	T		B													T	T					.	.			T	T																					T	T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.			.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630		.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		F	W	Q	A	N	Q	L	I	E	M	P	E	N	P	D	S	E	R	F	I	R	F	A	D	F	C	R	D	P	L	A	H	P	L	K	T	A	S	G	K	I	E	I	F	S	Q	R	I	A	D	Y	G	Y	P	D	C	P	G	H	P	M	W	L	E	P	D	E	W	Q	G	N	.	A	E	P	E	Q	L	Q	V
Query Conservation																																																																									.
Alig confidence												.	.																																																												.
Template Conservation												.	.
Template Sequence		F	W	S	E	G	I	V	E	F	P	.	.	I	T	E	G	A	N	F	V	R	Y	A	D	F	R	E	D	P	L	F	N	P	L	G	T	P	S	G	L	I	E	I	Y	S	K	N	I	E	K	M	G	Y	D	D	C	P	A	H	P	T	W	M	E	P	A	E	R	L	G	G	A	G	A	K	Y	P	L	H	V
Template Known Secondary structure												.	.		S	G	G	G	G			T	T							T	T	T	S			S	S	T	T	S	S			S	S										T	T	S		S	S							S	S		T	T		T	T			S	S
Template Predicted Secondary structure												.	.
Template SS confidence
		562	.	.	.	.	.	.	.	570	.			.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
		639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	A	H	P	A	H	R	L	H	S	Q	L	N	Y	S	S	L	R	E	L	Y	A	V	A	N	R	E	P	V	T	I	H	P	D	D	A	Q	E	R	G	I	Q	D	G	D	T	V	R	L	W	N	A	R	G	Q	I	L	A	G	A	V	I	S	E	G	I	K	P	G	V	I	C	I	H	E	G	A	W	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	S	H	P	K	S	R	L	H	S	Q	L	N	G	T	S	L	R	D	L	Y	A	V	A	G	H	E	P	C	L	I	N	P	A	D	A	A	A	R	G	I	A	D	G	D	V	L	R	V	F	N	D	R	G	Q	I	L	V	G	A	K	V	S	D	A	V	M	P	G	A	I	Q	I	Y	E	G	G	W	Y
Template Known Secondary structure							S	S	S	B	T	T	B	T	T	T	S	G	G	G	G	G	T		B	T	T	B												T	T	T			T	T								S	S											T	T	B		T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.
		719	720	.	.			.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		D	L	D	L	.	.	T	A	D	G	I	C	K	N	G	A	V	N	V	L	T	K	D	L	P	S	S	R	L	G	N	G	C	A	G	N	T	A	L	A	W	L	E	K	Y	N	G	P	E	L	T	L	T	A	F	E	P	P	A	S	S
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		D	P	L	D	P	S	E	E	G	T	L	D	K	Y	G	D	V	N	V	L	S	L	D	V	G	T	S	K	L	A	Q	G	N	C	G	Q	T	I	L	A	D	V	E	K	Y	A	G	A	P	V	T	V	T	V	F	D	T	P	K	G	A
Template Known Secondary structure			B	S		T	T	S	T	T			B	S	S			G	G	G	S						S		T	T	T					T	T											S							T	T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780