Job Description P76185 Confidence 99.96% Date Thu Jan 5 12:20:14 GMT 2012 Rank 2 Aligned Residues 235 % Identity 23% Template c3fppB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:macrolide-specific efflux protein maca; PDBTitle: crystal structure of e.coli maca Resolution 2.99 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		Y	M	Q	S	P	W	T	R	D	G	K	I	R	A	.	E	Q	V	S	I	T	P	Q	V	S	G	R	I	V	E	L	N	I	K	D	N	Q	L	V	N	A	G	D	L	L	L	T	I	D	K	T	P	F	Q	I	A	E	L	N	A	Q	A	Q	L	A	K	A	Q	S	D	L	A	K	A	N	N	E	A	N	R
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		D	L	Q	Q	S	V	L	A	T	G	K	L	D	A	L	R	K	V	D	V	G	A	Q	V	S	G	Q	L	K	T	L	S	V	A	I	G	D	K	V	K	K	D	Q	L	L	G	V	I	D	P	E	Q	A	E	N	Q	I	K	E	V	E	A	T	L	M	E	L	R	A	Q	R	Q	Q	A	E	A	E	L	K	L
Template Known Secondary structure																								S	S											T	T		B			T	T
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		108	.	110	.	.									.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140								.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Query Sequence		R	R	H	L	S	.	.	.	.	.	.	.	.	Q	N	F	I	S	A	E	E	L	D	T	A	N	L	N	V	K	A	M	Q	A	S	V	D	A	A	Q	A	.	.	.	.	.	.	.	T	L	K	Q	A	Q	W	Q	L	A	Q	T	E	I	R	A	P	V	S	G	W	V	T	N	L	T	T	R	I	G	D	Y
Query Conservation							.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	V	T	Y	S	R	Q	Q	R	L	A	Q	T	Q	A	V	S	Q	Q	D	L	D	N	A	A	T	E	M	A	V	K	Q	A	Q	I	G	T	I	D	A	Q	I	K	R	N	Q	A	S	L	D	T	A	K	T	N	L	D	Y	T	R	I	V	A	P	M	A	G	E	V	T	Q	I	T	T	L	Q	G	Q	T
Template Known Secondary structure															S			S	T	T								T																																T	T					S	S		S	B						S		S	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		173	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.																																						.
Query SS confidence							.	.	.																																						.
Query Sequence		A	D	T	G	K	.	.	.	P	L	F	A	L	V	D	S	H	S	F	Y	V	I	G	Y	F	E	E	T	K	L	R	H	I	R	E	G	A	P	A	Q	I	T	L	Y	S	.	D	N	K	T	L	Q	G	H	V	S	S	I	G	R	A	I	Y	D	Q	S	V	E	S	D	S	S	L	I	P	D	V	K	P	N
Query Conservation							.	.	.																																						.
Alig confidence							.	.	.																																						.																									.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	A	A	Q	Q	A	P	N	I	L	T	L	A	D	M	S	A	M	L	V	K	A	Q	V	S	E	A	D	V	I	H	L	K	P	G	Q	K	A	W	F	T	V	L	G	D	Q	L	T	R	Y	E	G	Q	I	K	D	V	L	P	T	P	E	K	V	N	D	A	I	F	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	S	S																					T	T	T	T	T	S			S	S								T	T	S	S	S										B		S	S				S	S	S	S			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	W	V	R	L	A	Q	R	V	P	V	R	F	A	L	D	K	V	P	G	D	V	T	L	V	S	G	T	T	C	S	I	A	V	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.									.	.
Template Conservation		.	.	.	.	.	.	.	.	.									.	.
Template Sequence		.	.	.	.	.	.	.	.	.	Y	Y	A	R	F	E	V	P	.	.	N	P	N	G	L	L	R	L	D	M	T	A	Q	V	H	I	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.									.	.			S	S				T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.									.	.
Template SS confidence
											275	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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