Job Description P76185 Confidence 99.97% Date Thu Jan 5 12:20:14 GMT 2012 Rank 1 Aligned Residues 220 % Identity 25% Template c2f1mA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra Resolution 2.71 Å

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		37	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.
Predicted Secondary structure								.																																																																					.
Query SS confidence								.																																																																					.
Query Sequence		D	G	K	I	R	A	.	E	Q	V	S	I	T	P	Q	V	S	G	R	I	V	E	L	N	I	K	D	N	Q	L	V	N	A	G	D	L	L	L	T	I	D	K	T	P	F	Q	I	A	E	L	N	A	Q	A	Q	L	A	K	A	Q	S	D	L	A	K	A	N	N	E	A	N	R	R	R	H	.	L	S	Q	N
Query Conservation								.																																																																					.
Alig confidence								.																																																																					.
Template Conservation
Template Sequence		P	G	R	T	S	A	Y	R	I	A	E	V	R	P	Q	V	S	G	I	I	L	K	R	N	F	K	E	G	S	D	I	E	A	G	V	S	L	Y	Q	I	D	P	A	T	Y	Q	A	T	Y	D	S	A	K	G	D	L	A	K	A	Q	A	A	A	N	I	A	Q	L	T	V	N	R	Y	Q	K	L	L	G	T	Q
Template Known Secondary structure								S								S	S									S		T	T					T	T	S		S																																						T	T	T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		F	I	S	A	E	E	L	D	T	A	N	L	N	V	K	A	M	Q	A	S	V	D	A	A	Q	A	T	L	K	Q	A	Q	W	Q	L	A	Q	T	E	I	R	A	P	V	S	G	W	V	T	N	L	T	T	R	I	G	D	Y	A	D	T	G	K	P	.	.	L	F	A	L	V	D	S	H	S	F	Y	V	I	G
Query Conservation																																																																		.	.
Alig confidence																																																																		.	.
Template Conservation
Template Sequence		Y	I	S	K	Q	E	Y	D	Q	A	L	A	D	A	Q	Q	A	N	A	A	V	T	A	A	K	A	A	V	E	T	A	R	I	N	L	A	Y	T	K	V	T	S	P	I	S	G	R	I	G	K	S	N	V	T	E	G	A	L	V	Q	N	G	Q	A	T	A	L	A	T	V	Q	Q	L	D	P	I	Y	V	D	V
Template Known Secondary structure		T																																				T	T					S	S								S	S		T	T					T	T		S	S		S							S	S
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		Y	F	E	E	T	K	L	R	H	I	R	E	G	A	P	A	Q	I	T	L	Y	S	.	D	N	K	T	L	Q	G	H	V	S	S	I	G	R	A	I	Y	D	Q	S	V	E	S	D	S	S	L	I	P	D	V	K	P	N	V	P	W	V	R	L	A	Q	R	V	P	V	R	F	A	L	D	K	V	P	G	D	V
Query Conservation																								.
Alig confidence								.	.	.	.	.												.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation								.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Sequence		T	Q	S	S	N	D	.	.	.	.	.	X	K	A	K	V	S	L	I	T	S	D	G	I	K	F	P	Q	D	G	T	L	E	F	S	D	V	T	V	D	Q	T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	T	L	R	A	I	F	P	.	.	N	P	D	H
Template Known Secondary structure					T	T	T	.	.	.	.	.										S	S	S		B		S	S		B			S	S	S						S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.		T	T
Template Predicted Secondary structure								.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template SS confidence
		217	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.																						.	.	.	.	260	.	.	.	.			.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	V	S	G	T	T	C	S	I	A	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	X	X	P	G	X	F	V	R	A	R	L	E
Template Known Secondary structure					S	S
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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