Job Description P76173 Confidence 7.79% Date Thu Jan 5 12:20:06 GMT 2012 Rank 3 Aligned Residues 230 % Identity 9% Template c3mk7K_ PDB info PDB header:oxidoreductase Chain: K: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit n; PDBTitle: the structure of cbb3 cytochrome oxidase Resolution 3.20 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.									.	.	.	.
Query SS confidence																														.	.	.									.	.	.	.
Query Sequence		D	A	D	R	Q	R	I	V	R	G	M	F	F	L	W	L	L	M	G	V	G	F	I	A	S	V	M	H	.	.	.	L	G	S	P	L	R	A	F	.	.	.	.	N	S	L	N	R	I	G	A	S	G	L	S	N	E	I	A	A	G	S	I	F	F	A	V	G	G	L	W	W	L	V	A	V	I	G	K	M
Query Conservation																														.	.	.									.	.	.	.
Alig confidence																														.	.	.									.	.	.	.
Template Conservation
Template Sequence		A	Y	S	Y	K	V	V	R	Q	F	A	I	M	T	V	V	W	G	I	V	G	M	G	L	G	V	F	I	A	A	Q	L	A	W	P	F	L	N	F	D	L	P	W	T	S	F	G	R	L	R	P	L	H	T	N	A	V	I	F	A	F	G	G	C	A	L	F	A	T	S	Y	Y	S	V	Q	R	T	C	Q	T
Template Known Secondary structure		S																																		G	G	G	G	T	T		T	T	T	S														T	T																			T	S
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	A	L	G	K	L	W	L	L	F	S	M	A	L	G	V	I	F	V	W	M	M	T	C	V	Y	Q	I	D	T	V	P	T	W	H	N	G	Y	T	T	L	A	F	F	L	T	V	L	L	S	G	P	I	L	A	A	A	I	L	R	A	A	R	V	T	F	N	T	T	P	F	A	I	I	S	V	L	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	F	A	P	K	L	A	A	F	T	F	W	G	W	Q	L	V	I	L	L	A	A	I	S	L	P	L	G	F	T	S	S	K	E	Y	A	E	L	E	W	P	I	D	I	L	I	T	I	V	W	V	A	Y	A	V	V	F	F	G	T	L	A	K	R	K	V	K	H	I	Y	V	G	N	W	F	F	G	A	F
Template Known Secondary structure				S	S																						T	T	T	T		B				T	T			B																									T		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.										.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.
Query Sequence		I	A	C	A	G	V	I	V	L	Q	G	L	S	L	A	S	I	.	.	.	.	.	.	.	.	.	H	S	S	V	Q	Q	A	S	A	L	V	P	D	Y	A	S	L	Q	V	W	R	V	V	L	L	C	A	G	L	G	C	W	L	C	P	L	I	R	R	R	E	P	H	V	A	G	L	I	L	G	L	I	L	I
Query Conservation																			.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	T	V	A	I	L	H	V	V	N	N	L	E	I	P	V	T	A	M	K	S	Y	S	L	Y	A	G	A	T	D	A	M	V	Q	W	W	Y	G	H	N	A	V	G	F	F	L	T	A	G	F	L	G	I	M	Y	Y	F	V	P	K	Q	A	E	R	P	V	Y	S	Y	R	L	S	I	V	H	F	W	A	L
Template Known Secondary structure													T							T	T					S																					T	T	T																T				S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		261	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	G	E	M	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	V	Y	I	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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