Job Description P76173 Confidence 2.33% Date Thu Jan 5 12:20:06 GMT 2012 Rank 20 Aligned Residues 116 % Identity 9% Template c1m0kA_ PDB info PDB header:ion transport Chain: A: PDB Molecule:bacteriorhodopsin; PDBTitle: bacteriorhodopsin k intermediate at 1.43 a resolution Resolution 1.43 Å

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		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	F	L	T	V	L	L	S	G	P	I	L	A	A	A	I	L	R	A	A	R	V	T	F	N	T	T	P	F	A	I	I	S	V	L	A	L	I	A	C	A	G	V	I	V	L	Q	G	L	S	L	A	S	I	H	S	S	V	Q	Q	A	S	A	L	V	P	D	Y	A	S	L	Q	V	W	R	V	V	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	I	W	L	A	L	G	T	A	L	M	G	L	G	T	L	Y	F	L	V	K	G	M	G	V	S	D	P	D	A	K	K	F	Y	A	I	T	T	L	V	P	A	I	A	F	T	M	Y	L	S	M	L	L	G	Y	G	L	T	M	V	P	F	G	G	E	Q	N	P	I	Y	W	A	R	Y	A	D	W	L	F	T
Template Known Secondary structure																							T	T	T																													T	T	T	T							T	T							T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	G	L	G	C	W	L	C	P	L	I	R	R	R	E	P	H	V	A	G	L	I	L	G	L	I	L	I	L	G	G	E	M	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	L	L	L	L	D	L	A	L	L	V	D	A	D	Q	G	T	I	L	A	L	V	G	A	D	G	I	M	I	G	T	G	L	V	G
Template Known Secondary structure													T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions