Job Description P76249 Confidence 1.25% Date Thu Jan 5 12:21:12 GMT 2012 Rank 27 Aligned Residues 187 % Identity 7% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	L	N	Y	W	T	Y	L	V	G	A	I	F	I	V	L	V	P	G	P	N	T	L	F	V	L	K	N	S	V	S	S	G	M	K	G	G	Y	L	A	A	C	G	V	F	I	G	D	A	V	L	M	F	L	A	W	A	G	V	A	T	L	I	K	T	T	P	I	L	F	N	I	V	R	Y	L	G	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	C	Y	L	F	L	L	V	L	C	A	G
Template Known Secondary structure																																		T	S	S			S																							S	S
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	L	Y	L	G	S	K	I	L	Y	A	T	L	K	G	K	N	S	E	A	K	S	D	E	P	Q	Y	G	A	I	F	K	R	A	L	I	L	S	L	T	N	P	K	A	I	L	F	Y	V	S	F	F	V	Q	F	I	D	V	N	A	P	H	T	G	I	S	F	F	I	L	A	A	T	L	E	L	V	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P
Template Known Secondary structure									S	S				S	T	T	T						T	T	T		S	T																														S		S	S																	T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Y	L	S	F	L	I	I	S	G	A	F	V	T	Q	Y	I	R	T	K	K	K	L	A	K	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C
Template Known Secondary structure												T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions