 |
Job Description | P77183 | Confidence | 95.63% | Date | Thu Jan 5 12:26:07 GMT 2012 |
Rank | 53 | Aligned Residues | 72 |
% Identity | 17% | Template | c2j6iC_ |
PDB info |
PDB header:oxidoreductase | Chain: C: PDB Molecule:formate dehydrogenase; |
PDBTitle: candida boidinii formate dehydrogenase (fdh) c-terminal2 mutant
|
Resolution | 1.55 Å |
|
 |
  |   |
179 | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
R | L | M | I | Y | G | R | S | L | E | A | Q | A | T | A | S | L | A | A | A | T | G | Y | D | S | H | I | F | D | L | F | P | A | S | A | S | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|
|   |
|
|
|
|
|   |
|
|   |   |
|
|   |
|
|   |   |
|
|   |   |
|   |
|   |
|   |
|
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|
|
|
|   |
|   |
|
|
|
|   |   |
|   |   |
|
|   |   |   |   |
|   |
Template Sequence |   |
T | I | A | T | I | G | A | G | R | I | G | Y | R | V | L | E | R | L | V | P | F | N | P | K | E | L | L | Y | Y | D | Y | Q | A | L | P | K | D | A | E | E | K | V | G | A | R | R | V | E | N | I | E | E | L | V | A | Q | A | D | I | V | T | V | N | A | P | L | H | A | G | T | K | G | L | I | N | K | E | L | L | S |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  | G | G | G |
|
| S |  |  |  |  |  |
| S | S |
|
|
|  |  |  |  |  |  |  | T |  |  |  |
| S | S |  |  |  |  |  |  |  |
| S |  |  |  |  |
|
|
|
| S | T | T | T | T | T |
| B |
|  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
166 | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . |
  |
  |   |
216 | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | |
. | . | . | . | . | 250 |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Query Sequence |   |
Q | I | D | T | D | T | A | V | I | L | L | C | H | D | L | N | R | E | L | P | V | L | Q | A | A | R | E | A | K | . |
P | F | Y | L | G | A |
Query Conservation |   |
  |   |
|   |   |
|   |
|
|
|
|
|
|   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |   | . |   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |
|   |
|
|
|   |
|
|
|   |
|
|
|
|   |
|
|   |   |
|
|   |   |
|   |
|   |
|
|
|
|
Template Sequence |   |
K | F | K | K | G | A | W | L | V | N | T | A | R | G | A | I | C | V | A | E | D | V | A | A | A | L | E | S | G | Q | L | R | G | Y | G | G |
Template Known Secondary structure |   |
T | S |
| T | T |  |  |  |  |  |
| S |
| G | G | G | B |
|  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
246 | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|