Job Description P75733 Confidence 26.52% Date Thu Jan 5 12:13:33 GMT 2012 Rank 26 Aligned Residues 218 % Identity 15% Template d1by5a_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.60

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.														.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	H	S	F	G	A	K	Y	D	F	K	N	N	F	V	L	E	A	A	F	G	Q	A	E	G	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	Y	F	A	K	A	S	Y	K	F	D	I	A	G	S	P	L	T	T	S	Y	Q	F	Y	G	T	R	D	K	V	D	D	R	S	V	N	D	L	Y
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	W	R	G	G	V	N	Y	L	F	D	N	G	V	T	P	Y	F	S	Y	S	E	S	F	E	P	S	S	Q	V	G	K	D	G	N	I	F	A	P	S	K	G	K	Q	Y	E	V	G	V	K	Y	V	P	E	D	R	P	I	V	V	T	G	A	V	Y	N	L	T	K	T	N	N	L	M	A	D	P	E	G	S
Template Known Secondary structure												T	T	S																	B		T	T	S		B																		S	S	S																					S	S
Template Predicted Secondary structure
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
									288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	D	G	T	A	W	L	Q	A	L	T	F	G	Y	R	A	A	D	V	V	D	L	R	L	E	G	T	W	V	K	A	D	G	Q	Q	G	Y	F	L	Q	R	M	T	P	T	Y	A	S	S	N	G	R	L	D	I	W	W	D	N	R	S	D	F	N	A	N	G	E	K	A	V	F	F	G
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	F	S	V	E	G	G	E	I	R	A	R	G	V	E	I	E	A	K	R	P	L	S	A	S	V	N	V	V	G	S	Y	T	Y	T	D	A	E	Y	T	T	D	T	T	Y	K	G	N	T	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	P	K	H	M	A	S	L	W
Template Known Secondary structure		S																					S	S	S	S																		T	T	T	T	T				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T			S
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.																				.	.	610	.	.	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	Y	D	L	K	N	W	N	L	P	G	F	A	I	G	A	S	Y	V	Y	A	W	D	A	K	P	A	T	W	Q	S	N	P	D	A	Y	Y	D	K	N	R	T	I	E	E	S	A	Y	S	L	D	A	V	Y	T	I	Q	D	G	R	A	K	G	T	M	F	K	L	H	F	T	E	Y	D	N	H	S	D	I
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.
Template Sequence		A	D	Y	T	F	F	D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	.	.	.	.	.	.	.	.	T	G	S	S	Y	G	D	P	A	N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	A	R	V	G	M	A	G	S	N	V	A	L	H	V	N	N	L	F	D	R	E	Y	V
Template Known Secondary structure								S	S	T	T	T	T										.	.	.	.	.	.	.	.						S	S	T	T			S																T	T	T	T	T		T	T									S	T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.
Template SS confidence
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.									.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	W	G	G	G	Y	G	N	I	F	Q	D	E	R	D	V	K	F	M	V	I	A	P	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	C	F	N	T	Y	G	C	F	W	G	A	E	R	Q	V	V	A	T	A	T	F	R	F
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions