Job Description P75733 Confidence 29.74% Date Thu Jan 5 12:13:33 GMT 2012 Rank 24 Aligned Residues 157 % Identity 11% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	D	G	T	A	W	L	Q	A	L	T	F	G	Y	R	A	A	D	V	V	D	L	R	L	E	G	T	W	V	K	A	D	G	Q	Q	G	Y	F	L	Q	R	M	T	P	T	Y	A	S	S	N	G	R	L	D	I	W	W	D	N	R	S	D	F	N	A	N	G	E	K	A	V	F	F	G	A	M	Y	D	L
Query Conservation
Alig confidence																																							.	.	.	.	.
Template Conservation																																							.	.	.	.	.
Template Sequence		G	S	H	A	Y	E	T	R	L	K	V	S	E	G	W	Q	N	G	W	W	A	S	M	E	S	N	T	W	N	T	I	N	D	V	Q	V	E	.	.	.	.	.	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A
Template Known Secondary structure		T	T	T													T	T	S																				.	.	.	.	.							S	S	S	S													T	T
Template Predicted Secondary structure																																							.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.						.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	W	N	L	P	G	F	A	I	G	A	S	Y	V	Y	A	W	D	A	K	P	A	T	W	Q	S	N	P	D	A	Y	Y	D	K	N	R	T	I	E	E	S	A	Y	S	L	D	A	V	Y	T	I	Q	D	G	R	A	K	G	T	M	F	K	L	H	F	T	E	Y	D	N	H	S	D	I	P	S	W	G	G
Query Conservation
Alig confidence		.	.	.	.																									.	.	.	.	.	.																				.	.	.	.
Template Conservation		.	.	.	.																									.	.	.	.	.	.																				.	.	.	.
Template Sequence		.	.	.	.	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	.	.	.	.	.	.	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	.	.	.	.	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H
Template Known Secondary structure		.	.	.	.	S	S	S													S	S					T	T	S	.	.	.	.	.	.																			S	.	.	.	.	S	S													S	S	S				T	T	S
Template Predicted Secondary structure		.	.	.	.																									.	.	.	.	.	.																				.	.	.	.
Template SS confidence
						97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	G	N	I	F	Q	D	E	R	D	V	K	F	M	V	I	A	P	F	T
Query Conservation
Alig confidence							.	.	.	.	.
Template Conservation							.	.	.	.	.
Template Sequence		K	K	W	A	T	.	.	.	.	.	E	N	A	F	V	L	Q	Y	H	M	T
Template Known Secondary structure		S	S				.	.	.	.	.										S	B
Template Predicted Secondary structure							.	.	.	.	.
Template SS confidence
		163	.	.	.	.						.	.	170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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