Phyre 2 alignment of P75733 with c2vqiA

Job Description P75733
Confidence 1.39% Date Thu Jan 5 12:13:33 GMT 2012

Rank 91 Aligned Residues 256

% Identity 13% Template c2vqiA_

PDB info PDB header:transport Chain: A: PDB Molecule:outer membrane usher protein papc; PDBTitle: structure of the p pilus usher (papc) translocation pore

Resolution 3.2 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence	F	K	Y	G	P	V	W	A	R	A	G	Y	I	Q	P	.	T	G	Q	T	L	L	A	P	H	W	S	F	M	P	G	T	Y	Q	G	A	E	A	G	A	N	F	D	Y	G	D	A	G	A	L	S	F	S	Y	M	W	T	N	E	Y	K	A	P	W	H	L	E	M	D	E	F	Y	Q	N	D	K	T	T	K	V
Query Conservation																.
Alig confidence																.										.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.
Template Sequence	R	V	L	Y	D	S	X	V	P	A	G	P	F	S	I	Q	D	L	D	S	S	V	R	G	R	.	.	.	.	.	.	.	.	.	.	L	D	V	E	V	I	E	Q	N	G	R	K	K	T	F	Q	V	D	T	A	S	V	P	Y	L	T	R	P	G	Q	V	R	Y	K	L	V	S	G	R	S	R	G	Y	E	G
Template Known Secondary structure										S										T	T			S		.	.	.	.	.	.	.	.	.	.								T	T	S																		T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
	281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.											.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

	219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence	D	Y	L	H	S	F	G	A	K	Y	D	F	K	N	N	F	V	L	E	A	A	F	G	Q	A	E	G	Y	I	D	Q	Y	F	A	K	A	S	Y	K	F	D	I	A	G	S	.	P	L	T	T	S	Y	Q	F	Y	G	T	R	D	K	V	D	D	R	S	V	N	D	L	Y	D	G	T	A	W	L	Q	A	L	T
Query Conservation																																														.
Alig confidence																															.	.	.													.																					.	.	.	.	.	.	.
Template Conservation																															.	.	.																																		.	.	.	.	.	.	.
Template Sequence	P	V	F	A	T	G	E	A	S	W	G	L	S	N	Q	W	S	L	Y	G	G	A	V	L	A	G	D	Y	N	A	.	.	.	L	A	A	G	A	G	W	D	L	G	V	P	G	T	L	S	A	D	I	T	Q	S	V	A	R	I	E	G	E	R	T	F	Q	.	.	.	.	.	.	.	G	K	S	W	R	L	S
Template Known Secondary structure													S	S	S											S	S				.	.	.										S	S	S															T	T	T					.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.																																		.	.	.	.	.	.	.
Template SS confidence
	355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.				.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.								.	.	420	.	.	.	.

	298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	G	Y	R	A	A	D	V	V	D	L	R	L	E	G	T	W	V	K	A	D	G	Q	Q	G	Y	F	L	Q	R	M	T	P	T	Y	A	S	S	N	G	R	L	D	I	W	W	D	N	R	S	D	F	N	A	N	G	E	K	A	V	F	F	G	A	M	Y	D	L	K	N	W	N	L	P	G	F	A	I	G	A
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence	Y	S	K	R	F	D	D	I	T	F	A	G	Y	R	F	S	E	R	N	Y	X	T	X	E	Q	Y	L	N	A	R	Y	R	N	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	S	R	E	K	E	X	Y	T	V	T	L	N	K	N	V	A	D	W	N	.	T	S	F	N	L	Q	Y
Template Known Secondary structure																		T	T													S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T	T	T	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
	425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.																		.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.		480	.	.	.	.	.	.

	378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	Y	V	Y	A	W	D	A	K	P	A	T	W	Q	S	N	P	D	A	Y	Y	D	K	N	R	T	I	E	E	S	A	Y	S	L	D	A	V	Y	T	I	Q	D	G	R	A	K	G	T	M	F	K	L	H	F	T	E	Y	D	N	H	S	D	I	P	S	W	G	G	G	Y	G	N	I	F	Q	D	E	R	D	V
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	S	R	Q	T	Y	W	D	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	D	Y	Y	T	V	S	V	N	R	Y	F	.	N	V	F	L	Q	G	V	A	V	G	L	S	A	S	R	S	K	Y	L	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	D	S	A
Template Known Secondary structure						S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.		S	S	S															T	T		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	491	.	.	.	.	.	.	.	.																			500	.	.	.	.	.	.	.	.	.	510	.	.		.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.														.	.	.	.	.

	458	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	F	M	V	I	A	P	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Y	L	R	I	S	V	P	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	540	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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