Return to main results Retrieve Phyre Job Id

Job DescriptionP31475
Confidence96.34%DateThu Jan 5 11:48:04 GMT 2012
Rank59Aligned Residues90
% Identity17%Templated1s3ja_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain MarR-like transcriptional regulators
Resolution2.25

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.. .......80.........90.........100.........110...
Predicted Secondary structure 









....



Query SS confidence 


































. . . .








































Query Sequence  PGEIELGEQFGVSRTAVREAVKTLTAKGMVLPRPR. . . . IGTRVMPQSNWNFLDQELLTWWMTEENFHQVIDHFLVMRIC
Query Conservation 


  

    


 


 

  
   


     .... 
  
                                 
  
Alig confidence 


































....











.....................







Template Conservation   
  


  
 
    

  
  
   
 
 
     
 
   
 

  
 .....................        
Template Sequence  LKVSEIAERXEVKPSAVTLXADRLEQKNLIARTHNTKDRRVIDLSLTDEGD. . . . . . . . . . . . . . . . . . . . . IKFEEVLA
Template Known Secondary structure  TS
TTS
SS
TTS
.....................
Template Predicted Secondary structure 















.....................
Template SS confidence 















































































   52.......60.........70.........80.........90.........100.. .......110
 
   114.....120.........130.........140........
Predicted Secondary structure 



Query SS confidence 


































Query Sequence  LEPQACLLAATVGTAEQKAHLNTLMAEMAALKENF
Query Conservation 

                  
              
Alig confidence 


































Template Conservation              
   
   
   
  
    
  
Template Sequence  GRKAIXARYLSFLTEEEXLQAAHITAKLAQAAETD
Template Known Secondary structure  TTS


Template Predicted Secondary structure 





Template SS confidence 


































   111........120.........130.........140.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions