 |
| Job Description | P31475 | | Confidence | 50.85% | Date | Thu Jan 5 11:48:04 GMT 2012 |
| Rank | 376 | Aligned Residues | 62 |
| % Identity | 13% | Template | c2zxjB_ |
| PDB info |
PDB header:transcription | Chain: B: PDB Molecule:transcriptional regulatory protein walr; |
PDBTitle: crystal structure of yycf dna-binding domain from staphylococcus2 aureus
|
| Resolution | 1.87 Å |
|
| | |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
| Predicted Secondary structure | |
|  | | | | | | | | | | | | | |
|
|
|
|
|
|
|
|
|
|
|
| | | | | | | | | . | . | . | . | . |
|
|
| | | | | | | | | | | | | | . | . | . | . | . | . | . | . |
|
|
|  | | |  |
|
|
| | | | | |
|
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
N | L | S | Y | V | L | A | E | K | L | A | Q | R | I | L | K | G | E | Y | E | P | G | T | I | L | P | G | E | I | E | L | G | E | Q | F | . |
. |
. |
. |
. |
G | V | S | R | T | A | V | R | E | A | V | K | T | L | T | A | . |
. |
. |
. |
. |
. |
. |
. |
K | G | M | V | L | P | R | P | R | I | G | T | R | V | M | P |
| Query Conservation | |
|
| | | |
| | | |
| | | |
| | |
| | | |
|
| | |
|
|
|
| | |
|
| | | | . | . | . | . | . | |
|
|
| |
|
|
| |
|
| | |
| | | . | . | . | . | . | . | . | . | |
|
|
| | | | | | |
| | |
| | |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
|
|
| | |
| | |
|
| | |
| | | | . | . | . | . | | | | |
| . |
| | | |
| | | |
|
| | | | | | | | | | |
| | | |
| |
|
|
|
|
|
| | | | | | | | | |
| |
|
| |
| |
|
| |
| | |
| Template Sequence | |
E | L | T | H | R | E | F | E | L | F | H | Y | L | S | K | H | . |
. |
. |
. |
M | G | Q | V | M | . |
T | R | E | H | L | L | Q | T | V | W | G | Y | D | Y | F | G | D | V | R | T | V | D | V | T | I | R | R | L | R | E | K | I | E | D | D | P | S | H | P | E | Y | I | V | T | R | R | G | V | G | Y | F | L | Q | Q |
| Template Known Secondary structure | |
|
|
| | | | | | | | | | | | T | T | . | . | . | . | T | T |
|
| | . | | | | | | | | | | T |
| T | T |
|
| S |
| T | | | | | | | | | | | | | | |
| S | S | T | T | S |
| S | S | | | | | T | T | T | | | | |
|
|
| Template Predicted Secondary structure | |
|
|
| | | | | | | | | | | | |
| . | . | . | . |
|
| | | | . |
| | | | | | | | |
|
|
|
|
|
|
|
|
| | | | | | | | | | | | | | | | |
|
|
|
|
|
| | | | | |
|
|
|
| | | | | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
157 | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | |
|
|
|
. | . | . | . | . | |
. | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
