 |
Job Description | P31475 | Confidence | 45.26% | Date | Thu Jan 5 11:48:04 GMT 2012 |
Rank | 412 | Aligned Residues | 25 |
% Identity | 36% | Template | c2a6eF_ |
PDB info |
PDB header:transferase | Chain: F: PDB Molecule:rna polymerase sigma factor rpod; |
PDBTitle: crystal structure of the t. thermophilus rna polymerase2 holoenzyme
|
Resolution | 2.80 Å |
|
  |   |
39 | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | |
|
|
|
. | . | . | . | 60 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
G | E | I | E | L | G | E | Q | F | G | V | S | R | T | A | V | R | . |
. |
. |
. |
E | A | V | K | T | L | T | A |
Query Conservation |   |
|
|   |   |
|
|   |   |   |   |
|
|
|   |
|
|
| . | . | . | . |   |
|
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|
|   |
Template Sequence |   |
D | G | E | E | V | G | A | F | F | G | V | T | R | E | R | I | R | Q | I | E | N | K | A | L | R | K | L | K | Y |
Template Known Secondary structure |   |
|
|
|  |  |  |  | S | S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
377 | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|