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Job DescriptionP33593
Confidence100.00%DateThu Jan 5 11:52:18 GMT 2012
Rank22Aligned Residues232
% Identity20%Templatec3gd7C_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:fusion complex of cystic fibrosis transmembrane PDBTitle: crystal structure of human nbd2 complexed with n6-2 phenylethyl-atp (p-atp)
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.... .....20.........30.........40.........50.........60.........70.........
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Query Sequence  QQIELRNIALQA. . . AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGI
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Template Sequence  GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR. . . . . LLNTEGEIQIDGVSWDSITLEQW
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SSTTS

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   1208.1210.........1220.........1230.........1240.........1250......... 1260.........1270.........1280..
 
   80 .........90.........100.........110.........120.........130.........140.........150.......
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Query Sequence  K. . IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLC
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Template Sequence  RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS
Template Known Secondary structure  GGGS





SSB
TTS
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TTTGGGSTTGGG
B

TTTTTS
T
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   1283......1290.........1300.........1310.........1320.........1330.........1340.........1350.........1360..
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
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Query Sequence  ESPFIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVT
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Template Sequence  KAKILLLDEPSAHLDPVTYQIIRRTLKQ. . . AFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV
Template Known Secondary structure  T

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SSGGGSTT
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   1363......1370.........1380.........1390 .........1400.........1410.........1420.........1430.........
 
   238.240..
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Query Sequence  RSLVS
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Template Sequence  AGFIG
Template Known Secondary structure  TTSS
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   1440....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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