Job Description P33593 Confidence 100.00% Date Thu Jan 5 11:52:18 GMT 2012 Rank 16 Aligned Residues 231 % Identity 22% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		M	P	Q	Q	I	E	L	R	N	I	A	L	Q	A	.	.	.	.	A	Q	P	L	V	H	G	V	S	L	T	L	Q	R	G	R	V	L	A	L	V	G	G	S	G	S	G	K	S	L	T	C	A	A	T	L	G	I	L	P	A	G	V	R	Q	T	A	G	E	I	L	A	D	G	K	P	V	S	P	C	A	L
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.																																							.	.	.	.
Template Conservation																																																										.	.	.	.
Template Sequence		L	E	G	N	V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	.	.	.	.	Y	D	P	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V
Template Known Secondary structure																S		G	G	G			S			S							S	S	S							S	S	S	T	T									T	T	S	.	.	.	.	S			S						S	S	S	S		B	T	S	S
Template Predicted Secondary structure																																																										.	.	.	.
Template SS confidence
		1027	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.					.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.
		77	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130									.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure						.	.																																																			.	.	.	.	.	.	.	.
Query SS confidence						.	.																																																			.	.	.	.	.	.	.	.
Query Sequence		R	G	I	K	.	.	I	A	T	I	M	Q	N	P	R	S	A	F	N	P	L	H	T	M	H	T	H	A	R	E	T	C	L	A	L	G	K	P	A	D	D	A	T	L	T	A	A	I	E	A	V	G	L	E	N	A	.	.	.	.	.	.	.	.	A	R	V	L	K	L	Y	P	F	E	M	S	G	G	M	L
Query Conservation						.	.																																																			.	.	.	.	.	.	.	.
Alig confidence						.	.									.	.						.												.	.																						.	.	.	.	.	.	.	.
Template Conservation																.	.						.												.	.
Template Sequence		Q	W	L	R	A	Q	L	G	I	V	S	Q	E	P	.	.	I	L	F	D	C	.	S	I	A	E	N	I	A	Y	G	D	N	.	.	S	R	V	V	S	Y	E	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L	S	G	G	Q	K
Template Known Secondary structure					T	T	S						S	S		.	.				S	S	.	B						T				S	.	.	S																T						S	S	T	T	T	G	G	G		B		S	T	T	S		S	S
Template Predicted Secondary structure																.	.						.												.	.
Template SS confidence
		1103	.	.	.	.	.	.	1110	.	.	.	.	.	.			.	.	.	1120	.		.	.	.	.	.	.	.	.	1130	.	.			.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	M	M	I	A	M	A	V	L	C	E	S	P	F	I	I	A	D	E	P	T	T	D	L	D	V	V	A	Q	A	R	I	L	D	L	L	E	S	I	M	Q	K	Q	A	P	G	M	L	L	V	T	H	D	M	G	V	V	A	R	L	A	D	D	V	A	V	M	S	D	G	K	I	V	E	Q	G	D	V	E
Query Conservation
Alig confidence																																										.	.																			.
Template Conservation																																										.	.																			.
Template Sequence		Q	R	I	A	I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	.	.	R	E	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	N	.	A	D	L	I	V	V	I	Q	N	G	K	V	K	E	H	G	T	H	Q
Template Known Secondary structure															S	S					S		S	S	S																	.	.	S	S	S	S							S		T	T	G	G	G	S	.		S							T	B
Template Predicted Secondary structure																																										.	.																			.
Template SS confidence
		1178	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.			.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.		.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	F	N	A	P	K	H	T	V	T	R	S	L	V	S	A	H	L
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		Q	L	L	A	.	.	Q	K	G	I	Y	F	S	M	V	S	V	Q	A
Template Known Secondary structure						.	.	S		S
Template Predicted Secondary structure						.	.
Template SS confidence
		1255	.	.	.			.	1260	.	.	.	.	.	.	.	.	.	1270	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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