Job Description P33593 Confidence 100.00% Date Thu Jan 5 11:52:18 GMT 2012 Rank 38 Aligned Residues 227 % Identity 25% Template c3b5xB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae Resolution 5.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		P	Q	Q	I	E	L	R	N	I	A	L	Q	A	.	.	.	A	Q	P	L	V	H	G	V	S	L	T	L	Q	R	G	R	V	L	A	L	V	G	G	S	G	S	G	K	S	L	T	C	A	A	T	L	G	I	L	P	A	G	V	R	Q	T	A	G	E	I	L	A	D	G	K	P	V	S	P	C	A	L	R	G
Query Conservation															.	.	.
Alig confidence															.	.	.																																									.	.	.	.
Template Conservation																																																										.	.	.	.
Template Sequence		N	G	E	V	D	V	K	D	V	T	F	T	Y	Q	G	K	E	K	P	A	L	S	H	V	S	F	S	I	P	Q	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	N	L	F	T	R	F	Y	D	.	.	.	.	V	D	S	G	S	I	C	L	D	G	H	D	V	R	D	Y	K	L	T	N
Template Known Secondary structure						B			S					S	S	T	T	S			S	S		S							S	S									T	T	T	T							T	T	S			S	S	.	.	.	.					S				T	T			S	T	T	S		S	S	S
Template Predicted Secondary structure																																																										.	.	.	.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.					.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		79	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130									.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure				.	.																														.																						.	.	.	.	.	.	.	.
Query SS confidence				.	.																														.																						.	.	.	.	.	.	.	.
Query Sequence		I	K	.	.	I	A	T	I	M	Q	N	P	R	S	A	F	N	P	L	H	T	M	H	T	H	A	R	E	T	C	L	A	L	.	G	K	P	A	D	D	A	T	L	T	A	A	I	E	A	V	G	L	E	N	A	.	.	.	.	.	.	.	.	A	R	V	L	K	L	Y	P	F	E	M	S	G	G	M	L	Q
Query Conservation				.	.																														.																						.	.	.	.	.	.	.	.
Alig confidence				.	.									.	.	.	.	.	.	.															.																						.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.
Template Sequence		L	R	R	H	F	A	L	V	S	Q	N	V	.	.	.	.	.	.	.	H	L	F	N	D	T	I	A	N	N	I	A	Y	A	A	E	G	E	Y	T	R	E	Q	I	E	Q	A	A	R	Q	A	H	A	M	E	F	I	E	N	M	P	Q	G	L	D	T	V	I	G	E	N	G	T	S	L	S	G	G	Q	R	Q
Template Known Secondary structure		S	S	T	T						S	S		.	.	.	.	.	.	.				T	T								T	T	S	S	S	S			S		S	T	T						T	S	T	T	T	T	T	T	S	S	S	S		S	S					S	S		S	S	S		T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.								.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	M	I	A	M	A	V	L	C	E	S	P	F	I	I	A	D	E	P	T	T	D	L	D	V	V	A	Q	A	R	I	L	D	L	L	E	S	I	M	Q	K	Q	A	P	G	M	L	L	V	T	H	D	M	G	V	V	A	R	L	A	D	D	V	A	V	M	S	D	G	K	I	V	E	Q	G	D	V	E	T
Query Conservation
Alig confidence																																											.	.															.
Template Conservation																																											.	.															.
Template Sequence		R	V	A	I	A	R	A	L	L	R	D	A	P	V	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	.	.	N	K	T	V	L	V	I	A	H	R	L	S	T	I	.	E	Q	A	D	E	I	L	V	V	D	E	G	E	I	I	E	R	G	R	H	A	D
Template Known Secondary structure										T				S	S						S		S	S			T	T	T										T	T	T	T	.	.	T	S							S		G	G	G	G	.	G	T		S							S	S						S
Template Predicted Secondary structure																																											.	.															.
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.			.	530	.	.	.	.	.	.	.	.	.	540	.	.		.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	N	A	P	K	H	T	V	T	R	S	L	V	S	A	H
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence		L	L	A	.	.	Q	D	G	A	Y	A	Q	L	H	R	I	Q
Template Known Secondary structure				S	.	.	S			T	T	T	T	T	S	T	T	S
Template Predicted Secondary structure					.	.
Template SS confidence
		565	.	.			.	.	570	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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