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Job DescriptionP33593
Confidence100.00%DateThu Jan 5 11:52:18 GMT 2012
Rank33Aligned Residues227
% Identity27%Templatec3b5wE_
PDB info PDB header:membrane proteinChain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba
Resolution5.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  PQQIELRNIALQA. . . AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRG
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Template Sequence  TGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF. . . . YDIDEGEILMDGHDLREYTLAS
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   339340.........350.........360.........370.........380.........390.. .......400.........410....
 
   7980 .........90.........100.........110... ......120....... ..130.........140.......
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Query Sequence  IK. . IATIMQNPRSAFNPLHTMHTHARETCLALGKPA. DDATLTAAIEAVGL. . . . . . . . ENAARVLKLYPFEMSGGMLQ
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Template Sequence  LRNQVALVSQNV. . . . . . . HLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ
Template Known Secondary structure  TT
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   415....420...... ...430.........440.........450.........460.........470.........480.......
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  RMMIAMAVLCESPFIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVET
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Template Sequence  RIAIARALLRDSPILILDEATSALDTESERAIQAALDEL. . QKNRTSLVIAHRLSTIEK. ADEIVVVEDGVIVERGTHND
Template Known Secondary structure  TTS

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SSGGGTTT.
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   488.490.........500.........510.........520...... ...530.........540.... .....550.........560....
 
   228.230.........240....
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Query Sequence  LFNAPKHTVTRSLVSAH
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Template Sequence  LLE. . HRGVYAQLHKMQ
Template Known Secondary structure  ..S
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   565.. ..570.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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