|   |
5 | . | . | . | . | 10 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
T | K | L | P | L | I | A | I | L | R | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | T | P | D | E | A | L | A | H | V | G | A | V | I | D | A | G | F | D | A | V | E | I | P | L | N | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | Q | W | E | Q | S |
Query Conservation |   |
  |   |   |
|
|
|   |   |
|   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
E | K | L | R | T | Y | A | S | Q | L | Q | F | G | W | G | D | K | N | H | I | L | V | T | P | E | E | Y | A | E | A | A | R | A | A | L | D | D | G | Y | D | A | I | K | V | D | P | L | E | I | D | R | N | G | D | D | C | V | F | Q | N | R | N | R | N | Y | S | G | L | L | L | A | D | Q | L | K | M | G | E | A | R |
Template Known Secondary structure |   |
S | S |  |  |  |  |  |  |
| G | G | G |
|
| T | T |
|
| S |
|
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |
| S | S | S | B |
| T | T | S |
| B | T | T | T | S | S |
|
| G | G | G | G | S |
|
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
126 | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . |
  |
  |   |
49 | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | |
|
. | . | . | 70 | . | . | . | |
|
|
|
. | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
|
|
. | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | |
|
. | . | 110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
| . | . |
|
|
|  |  |  |  | . | . | . | . |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
| . | . | . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . | . |  |
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | P | A | I | V | D | A | Y | G | D | K | A | L | I | G | A | G | T | . |
. |
V | L | K | P | E | Q | V | . |
. |
. |
. |
D | A | L | A | R | M | G | C | Q | L | I | V | T | P | N | . |
. |
. |
I | H | S | E | V | I | R | R | A | V | G | Y | G | M | T | V | C | P | G | . |
. |
C | A | T | A | T | E | A | F | T | A |
Query Conservation |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   | . | . |   |   |   |   |   |   |   | . | . | . | . |   |   |
|   |   |   |   |
|   |   |
|   |   |   |   | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   | . | . |
|   |
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|
|   |
|   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |
|   |
|
|
|
|
|   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | A | A | M | R | E | A | M | G | D | D | A | D | I | I | V | E | I | H | S | L | L | G | T | N | S | A | I | Q | F | A | K | A | I | E | K | Y | R | I | F | L | Y | E | E | P | I | H | P | L | N | S | D | N | M | Q | K | V | S | R | S | T | T | I | P | I | A | T | G | E | R | S | Y | T | R | W | G | Y | R | E | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
| S | S | S |  |  |  |  |  |
| T | T |
| S |
|  |  |  |  |  |  |  |  |  |  |  | G | G | G |
|  |  |  |  |  |
| S | S |
| S | S |
|  |  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  |
| T | T |
|
| T | T |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
206 | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . |
  |
  |   |
118 | . | 120 | . | |
. | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | |
. | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 |
Predicted Secondary structure |   |
 |  |
|
| . |
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
| . |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | E | A | G | . |
A | Q | A | L | K | I | F | P | S | S | A | F | G | P | Q | Y | I | K | A | L | K | A | V | L | P | S | . |
D | I | A | V | F | A | V | G | G | V | T | P | E | N | L | A | Q | W | I | D | A | G | C |
Query Conservation |   |
  |   |   |
| . |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |
|
|
|   |
|   |
|
|
|
|   |   |   |
|   |   |   |
|   |   |
|
|
Alig confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |
|   |   |   |   |
|   |   |   |   |
|
|
|
|   |   |   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |
|
Template Sequence |   |
L | E | K | Q | S | I | A | V | A | Q | P | D | L | C | L | C | G | G | I | T | E | G | K | K | I | C | D | Y | A | N | I | Y | D | T | T | V | Q | V | H | V | C | G | G | P | V | S | T | V | A | A | L | H | M | E | T |
Template Known Secondary structure |   |
 |  | T | T |
|
| S |  |  |
|
|
| T | T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |
|
|
|
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
286 | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 |
  |