Return to main results Retrieve Phyre Job Id

Job DescriptionQ6BF16
Confidence97.61%DateThu Jan 5 12:37:28 GMT 2012
Rank189Aligned Residues198
% Identity12%Templated1wdda1
SCOP infoTIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain
Resolution1.35

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10... ......20.........30...... ...40..... ....50.........60....... .
Predicted Secondary structure 

....







...




.........







.
Query SS confidence 







. . . .






















. . .








. . . . . . . . .





















.
Query Sequence  KLPLIAIL. . . . RGITPDEALAHVGAVIDAGFDAV. . . EIPLNSPQW. . . . . . . . . EQSIPAIVDAYGDKALIGAGTV. L
Query Conservation    


  
....           
      
   
...
        .........   
  
         
     . 
Alig confidence 







....






















...

.





.........





















.
Template Conservation   









  



   
   

 
 



 





.  

  
 



 
  


 

  


   

  



 
Template Sequence  GRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTDDENV. NSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAG
Template Known Secondary structure  SS



SSSS


TT
SB


TT
.SSBTTB
SS

B




S
Template Predicted Secondary structure 


















.













Template SS confidence 















































































   166...170.........180.........190.........200..... ....210.........220.........230.........240....
 
   6970..... ....80....... ..90.........100...... ...110.........120....
Predicted Secondary structure 
....





......





..............





Query SS confidence 






. . . .











. . . . . .


















. . . . . . . . . . . . . .

















Query Sequence  KPEQVDA. . . . LARMGCQLIVTP. . . . . . NIHSEVIRRAVGYGMTVCP. . . . . . . . . . . . . . GCATATEAFTALEAGAQA
Query Conservation         ....
    
  
   ......             
     .............. 
 
  
   
   
   
Alig confidence 






....











......


















..............

















Template Conservation     

 


  
 
 

   

     
  

  
        


 



  

  
    


  

 

 





 
Template Sequence  TCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDH
Template Known Secondary structure  ST
S
T

TTS
SSSS



S
Template Predicted Secondary structure 



























Template SS confidence 















































































   246...250.........260.........270.........280.........290.........300.........310.........320.....
 
   125....130 .........140...... ...150.........160....... ..170....... .
Predicted Secondary structure 


...






.....................






.



.
Query SS confidence 





. . .















. . . . . . . . . . . . . . . . . . . . .




















.









.
Query Sequence  LKIFPS. . . SAFGPQYIKALKAVLP. . . . . . . . . . . . . . . . . . . . . SDIAVFAVGGVTPENLAQWID. AGCAGAGLGS. D
Query Conservation 
     ...                .....................  


 
 



   
   
 . 

  
 


.
Alig confidence 





...















.....................




















.









.
Template Conservation 
   
  

          
   

      
              
   

 


   
 

      
 



  


Template Sequence  IHAGTVVGKLEGEREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGG
Template Known Secondary structure 


SSSSS



S

BGGGTB
S

TT



SS

GGG
SSS
S
Template Predicted Secondary structure 







































Template SS confidence 















































































   326...330.........340.........350.........360.........370.........380.........390.........400.....
 
   179180.........190.........200....
Predicted Secondary structure 



Query SS confidence 

























Query Sequence  LYRAGQSVERTAQQAAAFVKAYREAV
Query Conservation 
                     
 
 
Alig confidence 

























Template Conservation 
 




  


 
 


 

   
 
Template Sequence  TLGHPWGNAPGAAANRVALEACVQAR
Template Known Secondary structure  TSTT
Template Predicted Secondary structure 







Template SS confidence 

























   406...410.........420.........430.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions