Job Description Q6BF16 Confidence 98.51% Date Thu Jan 5 12:37:28 GMT 2012 Rank 160 Aligned Residues 167 % Identity 16% Template c3ktsA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 Resolution 2.75 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.					.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.												.
Query SS confidence																																																																		.	.	.	.												.
Query Sequence		Q	T	K	L	P	L	I	A	I	L	R	G	I	T	P	D	E	A	L	A	H	V	G	A	V	I	D	A	G	F	D	A	V	E	I	P	L	N	S	P	Q	W	E	Q	S	I	P	A	I	V	D	A	Y	G	D	K	A	L	I	G	A	G	T	V	.	.	.	.	L	K	P	E	Q	V	D	A	L	A	R	.
Query Conservation																																																																		.	.	.	.												.
Alig confidence																.	.	.	.	.	.																																													.	.	.	.												.
Template Conservation																.	.	.	.	.	.
Template Sequence		F	S	N	Q	S	I	I	P	A	A	H	N	Q	K	.	.	.	.	.	.	D	M	E	K	I	L	E	L	D	L	T	Y	M	V	M	L	E	T	H	V	A	Q	L	K	A	L	V	K	Y	A	Q	A	G	G	K	K	V	L	L	H	A	D	L	V	N	G	L	K	N	D	D	Y	A	I	D	F	L	C	T	E
Template Known Secondary structure			T	T								S	S	S		.	.	.	.	.	.						T	T	S	S								S			T	T	T											T	T							G	G	G			T				S										T
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110							.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		M	G	C	Q	L	I	V	T	P	N	I	H	S	E	V	I	R	R	A	V	G	Y	G	M	T	V	C	P	G	C	A	T	.	.	.	.	.	.	A	T	E	A	F	T	A	L	E	A	G	A	Q	A	L	K	I	F	P	S	S	A	F	G	P	Q	Y	I	K	A	L	K	A	V	L	P	S	D	I	A	V	F
Query Conservation																																		.	.	.	.	.	.
Alig confidence									.	.																								.	.	.	.	.	.																				.	.															.	.
Template Conservation									.	.																																																	.	.															.	.
Template Sequence		I	C	P	D	G	I	I	.	.	S	T	R	G	N	A	I	M	K	A	K	Q	H	K	M	L	A	I	Q	R	L	F	M	I	D	S	S	A	Y	N	K	G	V	A	L	I	Q	K	V	Q	P	D	C	I	E	L	L	P	.	.	G	I	I	P	E	Q	V	Q	K	M	T	Q	K	L	.	.	H	I	P	V	I
Template Known Secondary structure		T			S				.	.		S											T	T											S																	S							.	.	T	T													.	.
Template Predicted Secondary structure									.	.																																																	.	.															.	.
Template SS confidence
		79	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.
		153	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.
Predicted Secondary structure							.																					.
Query SS confidence							.																					.
Query Sequence		A	V	G	G	V	.	T	P	E	N	L	A	Q	W	I	D	A	G	C	A	G	A	G	L	G	S	.	D	L	Y	R	A
Query Conservation							.																					.
Alig confidence							.																					.
Template Conservation
Template Sequence		A	G	G	L	I	E	T	S	E	Q	V	N	Q	V	I	A	S	G	A	I	A	V	T	T	S	N	K	H	L	W	E	G
Template Known Secondary structure				S	S			S									T	T	T									G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions