Job Description Q6BF16 Confidence 96.40% Date Thu Jan 5 12:37:28 GMT 2012 Rank 251 Aligned Residues 145 % Identity 19% Template c2v9dB_ PDB info PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 Resolution 2.15 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.							.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.						.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.																											.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.																											.	.	.	.	.
Query Sequence		T	K	L	P	L	I	A	I	L	R	G	I	T	P	D	E	A	L	A	H	V	G	A	V	I	D	A	G	F	D	A	V	E	I	.	.	.	.	.	.	P	L	N	S	P	Q	W	E	Q	S	I	P	A	I	V	D	A	Y	G	D	K	A	L	I	G	A	.	.	.	.	.	G	T	V	L	K	P	E	Q	V
Query Conservation																																				.	.	.	.	.	.																											.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.																											.	.	.	.	.
Template Conservation
Template Sequence		R	R	V	P	V	L	I	G	T	G	G	T	N	A	R	E	T	I	E	L	S	Q	H	A	Q	Q	A	G	A	D	G	I	V	V	I	N	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	T	L	P	V	X	L	Y	N	F	P	A	L	T	G	Q	D	L	T	P	A	L	V
Template Known Secondary structure		T	S	S								S	S																T		S								S	S	S																			S	S												S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.							.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.
Query Sequence		D	A	L	A	R	M	G	C	Q	L	I	V	T	P	N	I	H	S	E	V	I	R	.	.	.	.	.	.	R	A	V	G	Y	G	M	T	V	C	P	G	C	A	T	A	T	E	A	F	T	A	L	E	A	G	A	Q	A	L	K	I	F	P	S	S	A	F	G	P	Q	Y	I	K	A	L	K	A	V	L	P	S
Query Conservation																								.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	L	A	D	S	R	S	N	I	I	G	I	K	D	T	I	D	S	V	A	H	L	R	S	X	I	H	T	V	K	G	A	H	P	H	F	T	V	L	C	G	Y	D	D	H	L	F	N	T	L	L	L	G	G	D	G	A	I	S	A	S	G	N	F	A	P	Q	V	S	V	N	L	L	K	A	W	R	D	G
Template Known Secondary structure									T	T									S																	T	T						S	S	G	G	G							T	T							G	G	G	T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		148	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		241	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions