Job Description P0A9A6 Confidence 51.64% Date Thu Jan 5 11:09:46 GMT 2012 Rank 261 Aligned Residues 71 % Identity 18% Template c3l4bG_ PDB info PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima Resolution 3.45 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		V	I	K	V	I	G	V	G	G	G	G	G	N	A	V	E	H	M	V	R	E	R	I	E	G	V	E	F	F	A	V	N	T	D	A	Q	A	L	R	K	.	.	T	A	V	G	Q	T	I	Q	I	G	S	G	I	T	K	G	L	G	A	G	A	N	P	E	V	G	R	N	A	A	D	E	D	R	D	A	L	R
Query Conservation																																										.	.
Alig confidence																										.	.	.														.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	I	I	I	G	G	E	T	T	A	Y	Y	L	A	R	S	M	L	S	R	K	Y	G	.	.	.	V	V	I	I	N	K	D	R	E	L	C	E	E	F	A	K	K	L	K	A	T	I	I	H	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	H	K	E	I	L	R	D
Template Known Secondary structure																						T	T			.	.	.						S												S	S	S					S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure																										.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																			.	.	.	.	.	.	.	.	60
		90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	E	G	A	D	M	V	F	I	A	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	V	S	K	N	D	V	V	V	I	L	T	P
Template Known Secondary structure			T			T	T								S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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